Miyakogusa Predicted Gene
- Lj0g3v0335209.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0335209.1 Non Characterized Hit- tr|F6HXG9|F6HXG9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.9,1e-17,VQ,VQ; seg,NULL,CUFF.22903.1
(262 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g079120.1 | VQ motif protein | HC | chr2:33155261-33154057... 160 1e-39
Medtr2g013950.1 | VQ motif protein | HC | chr2:3839731-3840815 |... 102 5e-22
Medtr4g088695.1 | VQ motif protein | HC | chr4:35303299-35302060... 87 2e-17
>Medtr2g079120.1 | VQ motif protein | HC | chr2:33155261-33154057 |
20130731
Length = 246
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 109/179 (60%), Gaps = 13/179 (7%)
Query: 71 PHTPKTLPRSDSNNPYPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXX-----XXXX 125
P TPKT+PRSDSN PYPTTFVQADTTTFK VVQMLTG
Sbjct: 49 PLTPKTIPRSDSN-PYPTTFVQADTTTFKQVVQMLTGSSETTSTTPTTTKPTTKPNQQQD 107
Query: 126 XXXXXRNFNIPPIKTAPIKKQGFKLYERRNSLKNN-LILNTMMPNXXXXXXXXXPRQAAE 184
RNFNIPPIKTAP KKQGFKLYERRNSLKN+ L+LNT+MPN +Q E
Sbjct: 108 LPQQTRNFNIPPIKTAP-KKQGFKLYERRNSLKNSVLMLNTLMPNFSQNSNFSPRKQQQE 166
Query: 185 XXXXXXXXXXXXXXXXVTPLNDDALGNSS-----SSEEDKAIAEKGFYLHPSPVSTPRD 238
VTPLNDD SS SSEEDKAIAE+G+YLHPSP++TPRD
Sbjct: 167 ILSPSLLDFPSLALSPVTPLNDDPFDKSSPSLGNSSEEDKAIAERGYYLHPSPITTPRD 225
>Medtr2g013950.1 | VQ motif protein | HC | chr2:3839731-3840815 |
20130731
Length = 264
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 84/183 (45%), Gaps = 31/183 (16%)
Query: 73 TPKTLPRSDSNNPYPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXXXXXXXXXXXRN 132
+P+ + RS+ NPYPTTFVQADTT+FK VVQMLTG N
Sbjct: 68 SPRPITRSEPGNPYPTTFVQADTTSFKQVVQMLTG--------SSETAKQASTSTKANHN 119
Query: 133 FNIPPIKTAPIKKQGFKLYERRNSLKNNLILNTMMPNXXXXXXXXXPRQAAEXXXXXXXX 192
NIP P K+QGFKLYERRNS NL +N ++P PR E
Sbjct: 120 HNIP-----PKKQQGFKLYERRNSFHKNLNINPLLP-PIFSNSTFSPRNKQEILSPSILD 173
Query: 193 XXXXXXXXVTPLNDDALGNSS---------------SSEEDKAIAEKGFYLHPSP--VST 235
VTPL D S S EDKAI EKGF+LHPSP ST
Sbjct: 174 FPSLVLSPVTPLIPDPFNRSGSSSSSSAARNGSSLDSLAEDKAIREKGFFLHPSPRAAST 233
Query: 236 PRD 238
RD
Sbjct: 234 SRD 236
>Medtr4g088695.1 | VQ motif protein | HC | chr4:35303299-35302060 |
20130731
Length = 244
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 82/178 (46%), Gaps = 31/178 (17%)
Query: 79 RSDSNNPYPTTFVQADTTTFKHVVQMLTGXXXXXXXXXXXXXXXXXXXXXXXRNFNIPPI 138
RS+ NPYPTTFVQAD ++FK VVQMLTG RN +IPP
Sbjct: 52 RSEPGNPYPTTFVQADPSSFKQVVQMLTG-----STETTTKQTSSTSSNNNLRN-HIPP- 104
Query: 139 KTAPIKKQGFKLYERRNSLKNNLILNTMMP--NXXXXXXXXXPRQAAEXXXXXXXXXXXX 196
KK GFKLYERRNSLK NL LN ++P + + E
Sbjct: 105 -----KKSGFKLYERRNSLK-NLHLNPLLPVFSSNSNNPSSFSPRKPEILSPSILDFPAL 158
Query: 197 XXXXVTPLNDDAL----------GNSSS------SEEDKAIAEKGFYLHPSPVSTPRD 238
VTPL D GN S E+KAI EK F+LHPSP +TPRD
Sbjct: 159 VLSPVTPLIPDPFNRTTVSGHRCGNGSPKPVLNIEAEEKAIKEKKFFLHPSPSTTPRD 216