Miyakogusa Predicted Gene

Lj0g3v0335059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0335059.1 Non Characterized Hit- tr|C5YDD7|C5YDD7_SORBI
Putative uncharacterized protein Sb06g004500
OS=Sorghu,59.7,3e-19,UPF0172,Uncharacterised protein family UPF0172;
GB DEF: HYPOTHETICAL UPF0172 PROTEIN AT5G55940,NULL;,CUFF.22886.1
         (67 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096260.1 | ER membrane protein complex subunit-like prote...    91   2e-19
Medtr5g096260.2 | ER membrane protein complex subunit-like prote...    86   9e-18

>Medtr5g096260.1 | ER membrane protein complex subunit-like protein
           | HC | chr5:42088289-42085304 | 20130731
          Length = 204

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 50/67 (74%)

Query: 1   MQLYVRDASKNWKLVPSDGNSRFSLKEPSANLVLSDYISSEKWNNIVXXXXXXXXXXXXX 60
           MQLYVRDASKNWKLV SD N+RFSLKEPSAN++L DYISSEKWN+IV             
Sbjct: 138 MQLYVRDASKNWKLVQSDANNRFSLKEPSANVILLDYISSEKWNDIVDFDDHLDDISKDW 197

Query: 61  XNPGLFN 67
            NPGLFN
Sbjct: 198 LNPGLFN 204


>Medtr5g096260.2 | ER membrane protein complex subunit-like protein
           | HC | chr5:42088289-42085707 | 20130731
          Length = 195

 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 44/47 (93%)

Query: 1   MQLYVRDASKNWKLVPSDGNSRFSLKEPSANLVLSDYISSEKWNNIV 47
           MQLYVRDASKNWKLV SD N+RFSLKEPSAN++L DYISSEKWN+IV
Sbjct: 138 MQLYVRDASKNWKLVQSDANNRFSLKEPSANVILLDYISSEKWNDIV 184