Miyakogusa Predicted Gene

Lj0g3v0334259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334259.1 tr|C1FHQ2|C1FHQ2_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_62160
,36.21,1e-18,no description,ssDNA-binding transcriptional regulator;
seg,NULL; ssDNA-binding transcriptional regu,CUFF.22818.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g468570.1 | whirly transcription factor | HC | chr8:248589...   323   1e-88
Medtr5g038560.1 | single-stranded DNA-binding protein WHY3 | HC ...   265   3e-71
Medtr7g116270.1 | single-stranded DNA-binding protein WHY3 | HC ...   169   3e-42

>Medtr8g468570.1 | whirly transcription factor | HC |
           chr8:24858986-24854938 | 20130731
          Length = 267

 Score =  323 bits (828), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/229 (72%), Positives = 186/229 (81%), Gaps = 5/229 (2%)

Query: 36  FPSKPLTLIRCRHSDLFDQKTFSSSTPQPANPAAVSVGALPPRVYVGHSIYKGKAALTVT 95
           F  KP T IRCRHSD+F+    +   P    P    VGALPPRVYVGHSIYKGKAALT+T
Sbjct: 39  FKFKPFT-IRCRHSDVFNPSPSNPPPPATTPPNNPLVGALPPRVYVGHSIYKGKAALTIT 97

Query: 96  PRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRE 155
           P PP+F  LDSGA+KISR+G +LLQFAP++  RQYDWNRKQ+F LSV EMGSVISLG RE
Sbjct: 98  PTPPKFVTLDSGAYKISRDGCLLLQFAPSVGPRQYDWNRKQLFMLSVDEMGSVISLGARE 157

Query: 156 SCEFFHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELA 215
           SCEFFHDP KG SDEGKVRKVLK+EP PDGSG FFNLSVQ+KIVN+D ++ IPV+KAEL+
Sbjct: 158 SCEFFHDPFKGGSDEGKVRKVLKIEPFPDGSGFFFNLSVQDKIVNVDVSMNIPVSKAELS 217

Query: 216 VLSSIFNFIMPYLLGWHTFANSVNPEYS----SGVNNANPRYGGDYEWN 260
           VL SIF +IMPYLLGWH FANS+NPEYS    +  NNANPRYGGDYEWN
Sbjct: 218 VLRSIFKYIMPYLLGWHAFANSINPEYSAALNNVANNANPRYGGDYEWN 266


>Medtr5g038560.1 | single-stranded DNA-binding protein WHY3 | HC |
           chr5:16941524-16946855 | 20130731
          Length = 261

 Score =  265 bits (677), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 137/224 (61%), Positives = 165/224 (73%), Gaps = 7/224 (3%)

Query: 40  PLTLIRCRHSDLFDQKTFSSSTPQPANPAAVS--VGALPPRVYVGHSIYKGKAALTVTPR 97
           P   + C H +LF  K F       ++ ++ S  VG LP RV+V  S+YKGKA L V+P 
Sbjct: 41  PTFSLTCHHPELFHPKPFPPPQRPQSSSSSFSSSVGELPARVHVSRSVYKGKAVLVVSPV 100

Query: 98  PPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRESC 157
            P+F   DSG FKIS+EG +LLQF P+   RQYDWNRKQVFSLSV EMG++I+LG RESC
Sbjct: 101 LPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQVFSLSVDEMGNLINLGARESC 160

Query: 158 EFFHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELAVL 217
           E FHDP  G+SDEGKVRKVLK+EPL DGSGH F LSVQN++ NIDENI+IPVTKAE AV 
Sbjct: 161 EIFHDPFMGRSDEGKVRKVLKVEPLHDGSGHMFKLSVQNQLKNIDENIFIPVTKAEFAVF 220

Query: 218 SSIFNFIMPYLLGWHTFANSVNPEYSSGVNNANP-RYGGDYEWN 260
           +S+F+FIMPYLLGW+ FA+S+ PE    VN ANP R   D+EWN
Sbjct: 221 NSLFSFIMPYLLGWNAFADSIKPE----VNIANPRRREEDFEWN 260


>Medtr7g116270.1 | single-stranded DNA-binding protein WHY3 | HC |
           chr7:47941989-47938429 | 20130731
          Length = 226

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 121/190 (63%), Gaps = 9/190 (4%)

Query: 73  GALPPRVYVGHSIYKGKAALTVTPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDW 132
           G    R++  +S+YKGKAA +++P  P F  LDSGA  + R G +++ F PAI  R+YDW
Sbjct: 41  GYTSDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRHGSIMMSFMPAIGERKYDW 100

Query: 133 NRKQVFSLSVVEMGSVISLGTRESCEFFHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNL 192
            ++Q+F+LS  E+GS+I++G ++SCEFFHDP    S+ G+VRK L ++  P  +G+F +L
Sbjct: 101 EKRQIFALSATEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKSLSIK--PHSNGYFVSL 158

Query: 193 SVQNKIVNIDENIYIPVTKAELAVLSSIFNFIMPYLLGWHTFANSVNPEYSSGVNNANPR 252
           SV N ++N  +N  +PVT AE AV+ +  +F +P+++GW    N    + SSG  +  P+
Sbjct: 159 SVVNSVLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTN----QQSSGTVSFQPK 214

Query: 253 YGG---DYEW 259
                 D EW
Sbjct: 215 MNSQILDLEW 224