Miyakogusa Predicted Gene

Lj0g3v0334199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334199.1 Non Characterized Hit- tr|B9RLX3|B9RLX3_RICCO
Mads box protein, putative OS=Ricinus communis
GN=RCOM,32.32,5e-17,seg,NULL,CUFF.22806.1
         (172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g041650.1 | MADS-box transcription factor family protein |...   206   1e-53
Medtr4g108720.1 | MADS-box transcription factor family protein |...    57   6e-09
Medtr4g108720.2 | MADS-box transcription factor family protein |...    57   6e-09
Medtr4g108720.3 | MADS-box transcription factor family protein |...    57   6e-09

>Medtr5g041650.1 | MADS-box transcription factor family protein | HC
           | chr5:18283169-18288697 | 20130731
          Length = 402

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 127/175 (72%), Gaps = 6/175 (3%)

Query: 4   PFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGRHASNLGSSSKLE 63
           P++MS  QHLQ LSW+ NGDSQN+VLPEDSNL L+KDVEGS SSSFG +AS LGSS+K  
Sbjct: 228 PYKMSHQQHLQSLSWMVNGDSQNLVLPEDSNLLLHKDVEGSTSSSFGSYASYLGSSTKTN 287

Query: 64  ISTSGQENCVLIDMS--STAPLRL-QLSGQIXXXXXXXXXXXXXKLQPTAAEINPHKNPV 120
           +S SGQE+C++ DMS  +TAP+RL Q +GQ+             KLQP     NPH+N V
Sbjct: 288 MSNSGQESCIINDMSNTTTAPVRLQQFNGQVPYIPNNFNIMNDMKLQPVTGMNNPHENQV 347

Query: 121 D-YHVDGSFEDPRPGYD--SNQHGWASTSGPCAVTMFDEHLYAQASFNKVHFGFT 172
           D YHV+ +FE PR G+D  +N HGW S SGPCAV +FDEHLY Q +F +VHFGFT
Sbjct: 348 DNYHVNANFEAPRQGFDQSNNHHGWTSNSGPCAVNIFDEHLYPQGNFPQVHFGFT 402


>Medtr4g108720.1 | MADS-box transcription factor family protein | HC
           | chr4:45025437-45028727 | 20130731
          Length = 356

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 1   MSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLY-----KDVEGSASSSFGRHASN 55
           MS P  MS  Q  QPLSW+ +GD+  ++LP +     +     +DVE S   S   ++  
Sbjct: 189 MSLPLMMSGLQESQPLSWLLSGDNHQLMLPSEPKFMPFSDNGNRDVECSTDISLPSYSGY 248

Query: 56  LGSSSKLEI------STSGQENCVLIDMSSTAP--LRLQLSGQIXXXXXXXXXXXXXKLQ 107
            G+  KLE+      +T GQ    L +++      L +Q   Q                 
Sbjct: 249 TGNC-KLEVGSSPHVTTLGQGGGTLNELNGNPSPYLNVQQCQQFAYPPPQDLEEVKHH-- 305

Query: 108 PTAAEINPHKNPVDYHVDGSFEDPRPGYDSNQHGWASTSGPCAVTMFDEHLY 159
                IN   N VDY V+ +++ P+  +++    W ST+G C + M++E+ Y
Sbjct: 306 ---QAINSKSNNVDYQVNNNYDLPKSLFENGHQFWNSTNGSCGIAMYNENGY 354


>Medtr4g108720.2 | MADS-box transcription factor family protein | HC
           | chr4:45025437-45028727 | 20130731
          Length = 356

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 1   MSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLY-----KDVEGSASSSFGRHASN 55
           MS P  MS  Q  QPLSW+ +GD+  ++LP +     +     +DVE S   S   ++  
Sbjct: 189 MSLPLMMSGLQESQPLSWLLSGDNHQLMLPSEPKFMPFSDNGNRDVECSTDISLPSYSGY 248

Query: 56  LGSSSKLEI------STSGQENCVLIDMSSTAP--LRLQLSGQIXXXXXXXXXXXXXKLQ 107
            G+  KLE+      +T GQ    L +++      L +Q   Q                 
Sbjct: 249 TGNC-KLEVGSSPHVTTLGQGGGTLNELNGNPSPYLNVQQCQQFAYPPPQDLEEVKHH-- 305

Query: 108 PTAAEINPHKNPVDYHVDGSFEDPRPGYDSNQHGWASTSGPCAVTMFDEHLY 159
                IN   N VDY V+ +++ P+  +++    W ST+G C + M++E+ Y
Sbjct: 306 ---QAINSKSNNVDYQVNNNYDLPKSLFENGHQFWNSTNGSCGIAMYNENGY 354


>Medtr4g108720.3 | MADS-box transcription factor family protein | HC
           | chr4:45025437-45028727 | 20130731
          Length = 356

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 1   MSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLY-----KDVEGSASSSFGRHASN 55
           MS P  MS  Q  QPLSW+ +GD+  ++LP +     +     +DVE S   S   ++  
Sbjct: 189 MSLPLMMSGLQESQPLSWLLSGDNHQLMLPSEPKFMPFSDNGNRDVECSTDISLPSYSGY 248

Query: 56  LGSSSKLEI------STSGQENCVLIDMSSTAP--LRLQLSGQIXXXXXXXXXXXXXKLQ 107
            G+  KLE+      +T GQ    L +++      L +Q   Q                 
Sbjct: 249 TGNC-KLEVGSSPHVTTLGQGGGTLNELNGNPSPYLNVQQCQQFAYPPPQDLEEVKHH-- 305

Query: 108 PTAAEINPHKNPVDYHVDGSFEDPRPGYDSNQHGWASTSGPCAVTMFDEHLY 159
                IN   N VDY V+ +++ P+  +++    W ST+G C + M++E+ Y
Sbjct: 306 ---QAINSKSNNVDYQVNNNYDLPKSLFENGHQFWNSTNGSCGIAMYNENGY 354