Miyakogusa Predicted Gene

Lj0g3v0333099.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0333099.1 Non Characterized Hit- tr|I3T6H9|I3T6H9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,The
RING-variant domain is a C4HC3 zinc-fing,Zinc finger, RING-CH-type;
RING/U-box,NULL; seg,NULL; n,CUFF.22846.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679...   256   5e-69
Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844...   136   8e-33
Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696...   117   4e-27
Medtr2g105850.2 | zinc finger protein | HC | chr2:45699264-45697...    60   6e-10
Medtr4g085550.1 | RING/U-box protein | HC | chr4:33432542-334251...    48   3e-06
Medtr4g085550.2 | RING/U-box protein | HC | chr4:33432535-334254...    48   3e-06

>Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679677
           | 20130731
          Length = 312

 Score =  256 bits (655), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 131/159 (82%), Gaps = 5/159 (3%)

Query: 1   MKGEVQLQPPPIMQNXXXXXXXXXXXXX-----XXXXXXXAEIKDEEDVEAGSLPCCRIC 55
           M GEVQLQPPPI QN                          EIKD+ED+EAGSLPCCRIC
Sbjct: 1   MLGEVQLQPPPIQQNPSDSDPLLAHQDEVEDDDSHGSGNSNEIKDQEDIEAGSLPCCRIC 60

Query: 56  LESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYED 115
           LESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE+YED
Sbjct: 61  LESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETYED 120

Query: 116 NSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDK 154
           NSWRKIKFRLFVARDVFLVF+AVQTVIAAIGGFAYIMDK
Sbjct: 121 NSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDK 159


>Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844555
           | 20130731
          Length = 325

 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 75/102 (73%), Gaps = 3/102 (2%)

Query: 52  CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
           CRICLE+D     + I+PC CKGT ++VHR CLDHWRSVKEGFAF+HCTTCKA +HLRV 
Sbjct: 36  CRICLETDGR---DFIAPCKCKGTSKYVHRECLDHWRSVKEGFAFAHCTTCKAPYHLRVH 92

Query: 112 SYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMD 153
              D  WR +KFR FV RD+  +F+AVQ +I ++    Y++D
Sbjct: 93  VAADRKWRTLKFRFFVTRDILSIFLAVQLIITSLAYLVYLID 134


>Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696892
           | 20130731
          Length = 246

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 71/101 (70%), Gaps = 3/101 (2%)

Query: 50  PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLR 109
           P CRICL+   +   +LI+PC CKGTQ++VHRSCLD+WRS KEGFAFSHCT C+A F +R
Sbjct: 57  PQCRICLDLGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRALFIIR 113

Query: 110 VESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAY 150
               +D  W ++KF+  VARD   +F+ VQ V+A +G   Y
Sbjct: 114 PNVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIY 154


>Medtr2g105850.2 | zinc finger protein | HC |
          chr2:45699264-45697009 | 20130731
          Length = 197

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 3/42 (7%)

Query: 50 PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVK 91
          P CRICL+   +   +LI+PC CKGTQ++VHRSCLD+WRS K
Sbjct: 57 PQCRICLDLGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTK 95


>Medtr4g085550.1 | RING/U-box protein | HC | chr4:33432542-33425198
           | 20130731
          Length = 1112

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 52  CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
           CRIC  +  D ++ L  PC C G+ +FVH+ CL  W +         C  CK  F     
Sbjct: 69  CRIC-RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSFS-P 123

Query: 112 SYEDNSWRKIKFRLFV 127
            Y +N+  ++ F+ FV
Sbjct: 124 VYAENAPARLPFQEFV 139


>Medtr4g085550.2 | RING/U-box protein | HC | chr4:33432535-33425425
           | 20130731
          Length = 1111

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 52  CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
           CRIC  +  D ++ L  PC C G+ +FVH+ CL  W +         C  CK  F     
Sbjct: 69  CRIC-RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSFS-P 123

Query: 112 SYEDNSWRKIKFRLFV 127
            Y +N+  ++ F+ FV
Sbjct: 124 VYAENAPARLPFQEFV 139