Miyakogusa Predicted Gene

Lj0g3v0332899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332899.1 Non Characterized Hit- tr|B9STZ0|B9STZ0_RICCO
Cell differentiation protein rcd1, putative
OS=Ricinus,85.27,0,Rcd1,Cell differentiation, Rcd1-like; SUBFAMILY NOT
NAMED,NULL; UNCHARACTERIZED,Cell differentiation,CUFF.22724.1
         (331 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g053170.1 | cell differentiation RCD1-like protein | HC | ...   543   e-155
Medtr8g106940.1 | cell differentiation RCD1-like protein | LC | ...   338   3e-93
Medtr6g065170.1 | cell differentiation RCD1-like protein | LC | ...   335   5e-92
Medtr5g093460.1 | cell differentiation RCD1-like protein | LC | ...   332   2e-91
Medtr1g056470.1 | cell differentiation RCD1-like protein | HC | ...   312   3e-85
Medtr3g018640.1 | cell differentiation RCD1-like protein | LC | ...   311   5e-85
Medtr1g043540.1 | cell differentiation RCD1-like protein | LC | ...   124   2e-28
Medtr1g043500.1 | cell differentiation RCD1-like protein | LC | ...    59   7e-09

>Medtr3g053170.1 | cell differentiation RCD1-like protein | HC |
           chr3:21111161-21103726 | 20130731
          Length = 306

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/281 (94%), Positives = 271/281 (96%), Gaps = 1/281 (0%)

Query: 52  EQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPTL 111
           EQLVLELSNP+LRENALLELSKKRE FQDLAPLLWNSFGTIAALLQEIVSIYPVLSPP L
Sbjct: 26  EQLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNL 85

Query: 112 TPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGV 171
           TPAQSNRVCNALALLQCVASHPDTRM FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGV
Sbjct: 86  TPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGV 145

Query: 172 IGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTT 231
           IGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTT
Sbjct: 146 IGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTT 205

Query: 232 AERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATF 291
           AERFFAVGRVLGNMV ALAEQ S+RLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATF
Sbjct: 206 AERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATF 265

Query: 292 SSCLREDTTTRRWLQQLLHNVGSGRVPAMQ-AGGFDHIMVN 331
           SSCLRED TTR+WLQQL+HNVG  RVPA+Q  GGFDH+MVN
Sbjct: 266 SSCLREDPTTRKWLQQLIHNVGGNRVPALQGGGGFDHLMVN 306


>Medtr8g106940.1 | cell differentiation RCD1-like protein | LC |
           chr8:45158277-45161780 | 20130731
          Length = 323

 Score =  338 bits (868), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 172/282 (60%), Positives = 204/282 (72%)

Query: 43  SSSNKMAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSI 102
           +++  M   E LV EL NP+LRENAL  LSK+ EL ++LAPLLWNSFGTIA LLQEI SI
Sbjct: 29  TTAQTMTFVEHLVTELINPNLRENALRVLSKRNELSRELAPLLWNSFGTIAVLLQEITSI 88

Query: 103 YPVLSPPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFE 162
           Y  LSPPTLT  QS R CN LALLQCVASH +TRM FLNA IPLYLYPFL T  KS  FE
Sbjct: 89  YCTLSPPTLTLGQSTRACNVLALLQCVASHSETRMLFLNASIPLYLYPFLKTKDKSPQFE 148

Query: 163 YLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDD 222
           YLRL SLGVIGALVK +  EV+ +L+ +E+IPLCL  ME+G+E+S+T ATFI+ KIL DD
Sbjct: 149 YLRLASLGVIGALVKDNTKEVLGYLILSEVIPLCLSNMEIGNEISQTAATFIIHKILFDD 208

Query: 223 VGLDYICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRACDALRSCL 282
            GL Y+C TAERFFAV RVL  M  +L +Q + RLLK II CY RLSD  RA  AL + L
Sbjct: 209 DGLAYVCATAERFFAVRRVLDMMFESLDKQPTPRLLKFIIPCYARLSDGRRAGIALANSL 268

Query: 283 PDMLRDATFSSCLREDTTTRRWLQQLLHNVGSGRVPAMQAGG 324
           P + RD  F + LRED  T +W++ L  NV   + P ++ GG
Sbjct: 269 PSVFRDTIFLNHLREDPATWKWVKHLQENVEKNQEPLVEGGG 310


>Medtr6g065170.1 | cell differentiation RCD1-like protein | LC |
           chr6:24130941-24126811 | 20130731
          Length = 323

 Score =  335 bits (858), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 174/283 (61%), Positives = 207/283 (73%)

Query: 48  MAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLS 107
           M   E+LV+ELSNPDLRENAL  LSK+ EL Q+LA LLWNSFGTIA LLQEI SIY  L 
Sbjct: 34  MTYMERLVIELSNPDLRENALRVLSKRNELSQELAHLLWNSFGTIAILLQEITSIYCTLL 93

Query: 108 PPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLT 167
           PPTLT AQS RVCN LALLQ +ASH +TRM FLNA +PLYLYPFL T  KS  FEYLR  
Sbjct: 94  PPTLTLAQSTRVCNVLALLQYLASHSETRMLFLNASMPLYLYPFLKTKEKSPQFEYLRFA 153

Query: 168 SLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDY 227
           SLGVIGALVKV+  EV+ +L+ +EIIPLCL  ME+G+E+SKT ATFI QKIL DD GL Y
Sbjct: 154 SLGVIGALVKVNTKEVLGYLILSEIIPLCLSNMEIGNEISKTTATFIFQKILFDDDGLAY 213

Query: 228 ICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRACDALRSCLPDMLR 287
           +C TAERFFAV RVL  M  +L +Q + RLLK+II CY RLS++  A  AL + LP + R
Sbjct: 214 VCATAERFFAVRRVLDMMSESLDKQPTCRLLKYIIPCYARLSNDRWAGIALANSLPSVFR 273

Query: 288 DATFSSCLREDTTTRRWLQQLLHNVGSGRVPAMQAGGFDHIMV 330
           D  F + +RED TT  W++ L  NV   + P +  GG ++ +V
Sbjct: 274 DTIFLNRVREDPTTWEWVKHLQENVRKNQEPLVAGGGENNDIV 316


>Medtr5g093460.1 | cell differentiation RCD1-like protein | LC |
           chr5:40820316-40804416 | 20130731
          Length = 437

 Score =  332 bits (852), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/281 (59%), Positives = 209/281 (74%), Gaps = 1/281 (0%)

Query: 43  SSSNKMAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSI 102
           +++++M   ++LV+EL NPDLR NAL  LSK    FQ+LAPLLWNSFGTI  L+QEI+SI
Sbjct: 158 TTAHRMVDMKRLVIELRNPDLRANALHVLSKMTS-FQELAPLLWNSFGTITILVQEIISI 216

Query: 103 YPVLSPPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFE 162
           YP LS   LTP QS R+C+ LALL CVASHP T+M FLNA++ LYLYPFL TTS+   +E
Sbjct: 217 YPTLSSENLTPTQSTRMCDVLALLMCVASHPTTKMSFLNANMHLYLYPFLQTTSELTQYE 276

Query: 163 YLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDD 222
           +LRL SLGVIGALVKV+  EV+SFLL  EIIPLCL  ME   E SK+V TFI+QK+LLD+
Sbjct: 277 WLRLGSLGVIGALVKVNTKEVMSFLLPNEIIPLCLGCMENDKEPSKSVGTFIIQKMLLDN 336

Query: 223 VGLDYICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRACDALRSCL 282
            GL Y+C TAE+FF V RV   M+ +L  Q S RLLK IIRCY RLS++ RA DAL SCL
Sbjct: 337 AGLAYVCDTAEQFFTVARVFDMMLSSLKNQHSPRLLKLIIRCYSRLSEHSRARDALTSCL 396

Query: 283 PDMLRDATFSSCLREDTTTRRWLQQLLHNVGSGRVPAMQAG 323
           P+ML+D  F +CL ED+TT R +++L  N+G  +   + +G
Sbjct: 397 PNMLKDFNFINCLYEDSTTWRCIKKLYENLGMNQASLVPSG 437



 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 103/134 (76%), Gaps = 1/134 (0%)

Query: 48  MAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLS 107
           MA  E+LV+ELSNPDLRENAL  LSK   LF +LAPLLWNS+GTIA  LQEI SIYP + 
Sbjct: 1   MASMERLVIELSNPDLRENALRVLSKD-GLFPELAPLLWNSYGTIAIFLQEITSIYPTIQ 59

Query: 108 PPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLT 167
              LT AQS RVCN LALLQCVASH  T+M FL+A++PLY YPFL T S+   FE+ RL 
Sbjct: 60  LLNLTQAQSTRVCNVLALLQCVASHSGTKMSFLDANMPLYFYPFLQTISELAQFEHFRLV 119

Query: 168 SLGVIGALVKVDDT 181
           SLGVIG LVK++++
Sbjct: 120 SLGVIGVLVKIENS 133


>Medtr1g056470.1 | cell differentiation RCD1-like protein | HC |
           chr1:24747585-24743876 | 20130731
          Length = 265

 Score =  312 bits (799), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 153/226 (67%), Positives = 179/226 (79%)

Query: 46  NKMAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPV 105
           NKM  AE LV+ELSNPDLRENAL  LSK  +LF+DLAPLLWNS GTIA  LQEI++IYP 
Sbjct: 28  NKMLYAECLVIELSNPDLRENALHLLSKMTDLFRDLAPLLWNSIGTIAIFLQEIITIYPA 87

Query: 106 LSPPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLR 165
           LSP  LTP+QS R+CN LALLQCVASHPDT++ F+ A+IP+YLYPFLNT++K  PFE LR
Sbjct: 88  LSPENLTPSQSTRICNTLALLQCVASHPDTKLSFMKANIPIYLYPFLNTSNKLAPFEDLR 147

Query: 166 LTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGL 225
           L SLGVI A+VKV   E I FLL+TE++PLCLR ME+G ELSKTVATFIV+KIL DD GL
Sbjct: 148 LASLGVIAAMVKVKTKEAIGFLLATEVMPLCLRNMEIGKELSKTVATFIVEKILSDDDGL 207

Query: 226 DYICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDN 271
            YIC T +RFFAVGR L  M+ ++  Q S RLLK +I CY  L+ N
Sbjct: 208 AYICGTPDRFFAVGRALDRMLASVDNQPSPRLLKLMIPCYTSLTKN 253


>Medtr3g018640.1 | cell differentiation RCD1-like protein | LC |
           chr3:5122017-5115864 | 20130731
          Length = 301

 Score =  311 bits (797), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 159/271 (58%), Positives = 194/271 (71%)

Query: 43  SSSNKMAGAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSI 102
           ++  +MA  + LV+ELSNPDLRENAL  LSK  +LF+ L PLLWN+ GTIA  LQEI+SI
Sbjct: 29  TTDQRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEGLGPLLWNTVGTIAVFLQEIISI 88

Query: 103 YPVLSPPTLTPAQSNRVCNALALLQCVASHPDTRMQFLNAHIPLYLYPFLNTTSKSRPFE 162
           YP LSPP L+P+QS RVC+ LALLQCVASHPDTR+ FLNA++PLYLYPFL TTSK   FE
Sbjct: 89  YPTLSPPNLSPSQSTRVCHVLALLQCVASHPDTRISFLNANMPLYLYPFLKTTSKLAHFE 148

Query: 163 YLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDD 222
            LR+ SLGVIG  +KV+  E I F LS+EII LCL  M+ G+EL+K VATFI+ KI+LDD
Sbjct: 149 KLRVASLGVIGGSMKVNTKEAIGFYLSSEIISLCLSNMQNGNELTKIVATFIILKIILDD 208

Query: 223 VGLDYICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRACDALRSCL 282
            GL  +C T E FF V RVL  M+  L    S RLL+ +I CY RLS N RA  AL + L
Sbjct: 209 DGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNYRARVALTTYL 268

Query: 283 PDMLRDATFSSCLREDTTTRRWLQQLLHNVG 313
           P+ L+DA   +  R+D  T R + +L  NVG
Sbjct: 269 PNRLKDANLINFFRDDPKTMRLVLELHENVG 299


>Medtr1g043540.1 | cell differentiation RCD1-like protein | LC |
           chr1:16340754-16341868 | 20130731
          Length = 136

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 85/125 (68%), Gaps = 1/125 (0%)

Query: 156 SKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIV 215
           SK   FEYLRLTSL VI ALVKV   EVI FLLS+EIIPLCL  ME+G ELSK + +F++
Sbjct: 9   SKLTQFEYLRLTSLVVIDALVKVKTKEVIDFLLSSEIIPLCLHNMEIGEELSK-ITSFMI 67

Query: 216 QKILLDDVGLDYICTTAERFFAVGRVLGNMVGALAEQQSTRLLKHIIRCYLRLSDNPRAC 275
           QKILLD+  L Y+  T E+F +V R+L  M+ +L  Q S RLLK I   YLRLS + R  
Sbjct: 68  QKILLDNDSLAYVYDTREQFSSVTRLLDMMLTSLENQPSPRLLKLIFSIYLRLSQHRRLV 127

Query: 276 DALRS 280
           +   +
Sbjct: 128 EKFHN 132


>Medtr1g043500.1 | cell differentiation RCD1-like protein | LC |
           chr1:16333563-16333327 | 20130731
          Length = 78

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 210 VATFIVQKILLDDVGLDYICTTAERFF-AVGRVLGNMVGALAEQQSTRLLKHIIRCYLRL 268
           V  FI++K+LLD+VG+ Y+C   ++FF ++  V G M+ +L  Q S  LLK II CY RL
Sbjct: 3   VGIFIIKKMLLDNVGMRYVCDKTKQFFLSIAPVWGMMLASLKNQPSPYLLKLIILCYSRL 62

Query: 269 SDN 271
           S +
Sbjct: 63  SKD 65