Miyakogusa Predicted Gene

Lj0g3v0332399.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332399.1 tr|B9MTJ8|B9MTJ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_589523 PE=4
SV=1,58.23,4e-17,coiled-coil,NULL; seg,NULL,CUFF.22664.1
         (247 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g099880.1 | nuclear pore complex Nup205-like protein | HC ...   283   8e-77

>Medtr7g099880.1 | nuclear pore complex Nup205-like protein | HC |
            chr7:40140621-40114841 | 20130731
          Length = 1883

 Score =  283 bits (725), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 157/246 (63%), Positives = 178/246 (72%)

Query: 1    MHALFSRDSSSKVPSFAQSRVSPENQRNSELQIFNLCXXXXXXXXXXVTKKSLRLQAXXX 60
            M+ LFSRDS+SKV  F +SRVSPENQR+SELQIF LC          VTKKSLRLQ+   
Sbjct: 1638 MNVLFSRDSNSKVLGFPRSRVSPENQRSSELQIFKLCFSLSSYLYFLVTKKSLRLQSSDA 1697

Query: 61   XXXYPTSIELQQPXXXXXXXXXXXXXXXXERAAEEKSLLLNKIRDINELSRQEVDEIINM 120
               YPTS+E QQP                ERAAEEKSLLLNKIRDINEL+RQEVDEII+M
Sbjct: 1698 SSSYPTSVEFQQPSLSLLNSLLSSATTALERAAEEKSLLLNKIRDINELARQEVDEIISM 1757

Query: 121  CVRQESLSSADNIQKRRYIAMVEMCRVVASRDRXXXXXXXXXXXXXXXXXIHLQNSSIAL 180
            CVRQES SS+DNIQ+RRYIAMVEMCRVV+  D+                 +HLQ+ S A 
Sbjct: 1758 CVRQESASSSDNIQRRRYIAMVEMCRVVSCTDQLIVLLLPLSEHVLNIILVHLQDCSDAF 1817

Query: 181  DPAMSTKTITYSSKCDPQQDMALFCGKLVPTLERLELLSEEKIGHNLKVFQRLTTSAKEI 240
            +  M+TKTITY +KCDPQQD+AL CG+LVPTLERLELLSEEK+GH LKVF RL TSAKEI
Sbjct: 1818 ESTMTTKTITYGAKCDPQQDLALLCGQLVPTLERLELLSEEKLGHTLKVFCRLATSAKEI 1877

Query: 241  AIQKLI 246
            AIQK+I
Sbjct: 1878 AIQKMI 1883