Miyakogusa Predicted Gene

Lj0g3v0332239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332239.1 Non Characterized Hit- tr|B6UGI9|B6UGI9_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,56.82,2e-19,seg,NULL; Ypt/Rab-GAP domain of gyp1p,Rab-GTPase-TBC
domain; no description,NULL; TBC1 DOMAIN FAMILY,CUFF.22646.1
         (148 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083840.1 | RabGAP/TBC domain protein | HC | chr3:37824348...   146   8e-36
Medtr8g085300.1 | RabGAP/TBC domain protein | HC | chr8:35334451...   127   4e-30
Medtr4g114580.1 | RabGAP/TBC domain protein | HC | chr4:47118501...    81   4e-16

>Medtr3g083840.1 | RabGAP/TBC domain protein | HC |
           chr3:37824348-37830080 | 20130731
          Length = 432

 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 95/151 (62%), Gaps = 6/151 (3%)

Query: 2   KKRVPDWLNSPLWNS--DHHRFSAAXXXXXXXXXXXXXXXV----IHDSRTRHNGXXXXX 55
           KKRVPDWLNSP+W+S  + +RFSA                     IH++ T         
Sbjct: 3   KKRVPDWLNSPMWSSPTEQNRFSATSYPSEPPSPPPVTVVEDPPSIHNAITTSPPSSSSS 62

Query: 56  XXXXXXXXXXXXXXXRQGHAQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLG 115
                           Q  +QLLAELSRKVIDMRELR++ASQGIPD+ GLRST+WKLLLG
Sbjct: 63  SASTSSTDDMSISRLAQSQSQLLAELSRKVIDMRELRKIASQGIPDSPGLRSTIWKLLLG 122

Query: 116 YLPQDRALWSSELAKKRSQYKHFKDDLLMNP 146
           YLP DR+LWSSELAKKRSQYK FK D+L+NP
Sbjct: 123 YLPPDRSLWSSELAKKRSQYKRFKQDILINP 153


>Medtr8g085300.1 | RabGAP/TBC domain protein | HC |
           chr8:35334451-35330009 | 20130731
          Length = 443

 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 70/73 (95%)

Query: 74  HAQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRS 133
           HAQLLAELS+KV+D+RELRR++ QG+PD++G+RST+WKLLLGYLP DRALWSSELAKKRS
Sbjct: 92  HAQLLAELSKKVMDLRELRRISCQGVPDSAGIRSTLWKLLLGYLPPDRALWSSELAKKRS 151

Query: 134 QYKHFKDDLLMNP 146
           QYK FK+++LMNP
Sbjct: 152 QYKQFKEEILMNP 164


>Medtr4g114580.1 | RabGAP/TBC domain protein | HC |
           chr4:47118501-47122390 | 20130731
          Length = 467

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%)

Query: 75  AQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQ 134
           + L  ELSRK I++ +LRR+AS GIPD  GLR+T WKLLLGYLP    LW ++L   R +
Sbjct: 110 SDLEYELSRKEINLEKLRRIASTGIPDGGGLRATAWKLLLGYLPLCHELWETQLKDNRLK 169

Query: 135 YKHFKDDLLMNP 146
           Y + K +LL NP
Sbjct: 170 YVNMKKELLSNP 181