Miyakogusa Predicted Gene

Lj0g3v0332049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332049.1 Non Characterized Hit- tr|D7M4K0|D7M4K0_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,57.14,6e-19,no
description,NULL; Rhomboid,Peptidase S54, rhomboid domain;
seg,NULL,CUFF.22630.1
         (188 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g008300.1 | rhomboid protease YdcA-like protein, putative ...   155   3e-38

>Medtr1g008300.1 | rhomboid protease YdcA-like protein, putative |
           HC | chr1:846306-849646 | 20130731
          Length = 285

 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 85/99 (85%), Gaps = 2/99 (2%)

Query: 62  THCSKIKN-SDLVPQLELGKPE-NKRKPEKRASGIFWVILLNIGIFVADKFFQVNGIKAM 119
           T C+   N SD++ QLE+ KPE NKR+P KR +GIFW+ILLNIGIFVAD FFQV GIKA+
Sbjct: 61  TLCNNNNNKSDMISQLEVAKPELNKREPVKRVNGIFWIILLNIGIFVADHFFQVGGIKAL 120

Query: 120 YLYHNRPSWYQFVTATFCHANWKHLSSNLFFLYIFGKAV 158
           YL+H+RP W+QF+TATFCHANWKHLSSNLFFLYIFGK V
Sbjct: 121 YLFHSRPDWFQFLTATFCHANWKHLSSNLFFLYIFGKLV 159