Miyakogusa Predicted Gene
- Lj0g3v0331349.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0331349.1 tr|A9SZH0|A9SZH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_167287,37.11,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL; CRM,RNA-binding, CRM
do,CUFF.22573.1
(202 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | H... 200 6e-52
Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 76 2e-14
Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 76 2e-14
Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:524... 63 2e-10
Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC | chr6:315... 59 3e-09
Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC ... 49 5e-06
Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC ... 48 5e-06
Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC ... 48 6e-06
>Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | HC |
chr6:2256928-2245549 | 20130731
Length = 1045
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 95/137 (69%), Positives = 109/137 (79%), Gaps = 1/137 (0%)
Query: 63 GEIFVPLPHNIPKHRVGHTLDPSWSTPENPVPLPGTGIARLSANELXXXXXXXXXXXXXX 122
GEIF+PLPH +PK+RVGHTLD SWSTPENPVPL G G+ +LS NE+
Sbjct: 80 GEIFLPLPHTLPKYRVGHTLDLSWSTPENPVPLVGAGLEKLSENEVERARLAKEKKREEK 139
Query: 123 XXXXVPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIV 182
VPTLAELSL + EI+RL LG+QMKQKIKVGKAG+TEGIVNGIHERWRRSEVVR+V
Sbjct: 140 RKR-VPTLAELSLTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVV 198
Query: 183 CDDICRINMKRTHDLLE 199
C+D+CRINMKRTHD+LE
Sbjct: 199 CEDLCRINMKRTHDILE 215
>Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33263693-33269751 | 20130731
Length = 838
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 129 TLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICR 188
++AEL+LP SE+ RL L F K K ++G G+T+ V+ IHERW+ SE+VR+ +
Sbjct: 205 SMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAA 264
Query: 189 INMKRTHDLLE 199
+NMKR H++LE
Sbjct: 265 LNMKRMHEILE 275
>Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33243553-33249532 | 20130731
Length = 838
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 129 TLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICR 188
++AEL+LP SE+ RL L F K K ++G G+T+ V+ IHERW+ SE+VR+ +
Sbjct: 205 SMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAA 264
Query: 189 INMKRTHDLLE 199
+NMKR H++LE
Sbjct: 265 LNMKRMHEILE 275
>Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:52429589-52424702 | 20130731
Length = 744
Score = 62.8 bits (151), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 130 LAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRI 189
LAE +P E+ RL + +M ++ VG AGIT+ +V+ IHE+W EVV+ D
Sbjct: 170 LAEKFIPEHELRRLRNMALRMVERFSVGVAGITQELVDAIHEKWMVDEVVKFKFDSPLSA 229
Query: 190 NMKRTHDLLE 199
NMKR H +LE
Sbjct: 230 NMKRAHQILE 239
>Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC |
chr6:31586826-31594407 | 20130731
Length = 820
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 127 VPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDI 186
P+LAEL+L + + RL G +++++ V KAG+T+ ++ IHE WR+ E+VR+ +
Sbjct: 205 APSLAELTLEDELLRRLRREGMHLRERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEE 264
Query: 187 CRINMKRTHDLLE 199
NM+ H ++E
Sbjct: 265 LAKNMRIAHQIVE 277
>Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43952280 | 20130731
Length = 463
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 135 LPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRINMKRT 194
L E+ RL T+G +KQKI + K+G+T ++ IH +W +E+V++ NM
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 195 HDLLE 199
H++++
Sbjct: 166 HNIVQ 170
>Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 634
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 135 LPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRINMKRT 194
L E+ RL T+G +KQKI + K+G+T ++ IH +W +E+V++ NM
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 195 HDLLE 199
H++++
Sbjct: 166 HNIVQ 170
>Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 523
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 135 LPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRINMKRT 194
L E+ RL T+G +KQKI + K+G+T ++ IH +W +E+V++ NM
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 195 HDLLE 199
H++++
Sbjct: 166 HNIVQ 170