Miyakogusa Predicted Gene

Lj0g3v0330509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0330509.1 Non Characterized Hit- tr|C0HJ73|C0HJ73_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,60.29,0.00000000000003,seg,NULL,CUFF.22505.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g059255.1 | transmembrane protein, putative | HC | chr7:21...   239   8e-64

>Medtr7g059255.1 | transmembrane protein, putative | HC |
           chr7:21455300-21450427 | 20130731
          Length = 174

 Score =  239 bits (611), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 136/161 (84%)

Query: 18  PNCSENRTVPLIHHQFSSFNSLLKLNKQAFLPNTHFRISRSQKPRSSFVVFAAQSNFLKV 77
           P C +N+T+   HHQF S NSLLKL KQ  LPNT F+ISRSQKPRS+FVVFA QSN  KV
Sbjct: 14  PICCQNQTLAPTHHQFRSPNSLLKLKKQTLLPNTQFKISRSQKPRSNFVVFAEQSNLSKV 73

Query: 78  LQNAWRVGRDGVDAGTNLVPNSVPRPIARISVTIAALSVTLFVLKSLLSTVFFVLAIVGL 137
           LQNAWRVG+DG+DAGTNLVPNSVPRPIARISVT  ALS  LFV KSLLST FF+LA +GL
Sbjct: 74  LQNAWRVGKDGIDAGTNLVPNSVPRPIARISVTFVALSALLFVFKSLLSTAFFILATIGL 133

Query: 138 AYFAYLAFNKDQEEPSGNGGTTSPPVDDPVEEARKIMDKYK 178
           AYFAYLAFNKDQ  PSGNGGTT+ P+DDP+EEA +IMDKYK
Sbjct: 134 AYFAYLAFNKDQGPPSGNGGTTTKPMDDPLEEANRIMDKYK 174