Miyakogusa Predicted Gene

Lj0g3v0330219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0330219.1 tr|Q70I39|Q70I39_LOTJA Coatomer alpha
subunit-like protein OS=Lotus japonicus PE=4
SV=1,88.89,0,COATOMER,NULL; coiled-coil,NULL; COPI_C,Coatomer, alpha
subunit, C-terminal,NODE_21365_length_635_cov_453.757477.path1.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090827.1 | coatomer subunit alpha-like protein | HC | chr...   235   9e-63
Medtr4g071130.1 | coatomer subunit alpha-like protein | HC | chr...   189   4e-49

>Medtr1g090827.1 | coatomer subunit alpha-like protein | HC |
            chr1:40855860-40850967 | 20130731
          Length = 1216

 Score =  235 bits (599), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 104/117 (88%), Positives = 112/117 (95%)

Query: 1    MTVCFRSKNLASAANFARRLLETSPTIENQAKQARQVLAAAERNMTDATELNYDFRNPFV 60
            M  CF++KNLA+AANFARRLLET+PTIENQAK ARQVLAAAERNMTDAT+LNYDFRNPFV
Sbjct: 1100 MVTCFKAKNLATAANFARRLLETNPTIENQAKTARQVLAAAERNMTDATQLNYDFRNPFV 1159

Query: 61   ICGATYVPIYRGQKDVSCPYCTSRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 117
            ICGATYVPIYRGQKDV+CPYCTSRFVPSQE QLCTVCD++VVGADASGLLCSPSQ R
Sbjct: 1160 ICGATYVPIYRGQKDVACPYCTSRFVPSQEGQLCTVCDISVVGADASGLLCSPSQVR 1216


>Medtr4g071130.1 | coatomer subunit alpha-like protein | HC |
            chr4:26807943-26801111 | 20130731
          Length = 1206

 Score =  189 bits (481), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/117 (73%), Positives = 97/117 (82%), Gaps = 17/117 (14%)

Query: 1    MTVCFRSKNLASAANFARRLLETSPTIENQAKQARQVLAAAERNMTDATELNYDFRNPFV 60
            MTVC+++KNLA+AANFARRLLET+P+IENQAK                  LNYDFRNPFV
Sbjct: 1107 MTVCYKAKNLATAANFARRLLETNPSIENQAKT-----------------LNYDFRNPFV 1149

Query: 61   ICGATYVPIYRGQKDVSCPYCTSRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 117
            ICGATYVPIYRGQKDVSCPYCTSRFVP+Q+ QLCTVC+L+VVGADASGLLCSP+Q R
Sbjct: 1150 ICGATYVPIYRGQKDVSCPYCTSRFVPTQDGQLCTVCELSVVGADASGLLCSPAQIR 1206