Miyakogusa Predicted Gene

Lj0g3v0329999.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0329999.2 Non Characterized Hit- tr|I4D7T0|I4D7T0_9FIRM
Putative membrane protein OS=Desulfosporosinus
acidiph,32.57,2e-18,Rhomboid-like,NULL; Rhomboid,Peptidase S54,
rhomboid domain; no description,NULL; SUBFAMILY NOT NAME,CUFF.22469.2
         (553 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0024s0260.1 | S54 family peptidase | HC | scaffold0024:1133...   565   e-161
Medtr0024s0260.2 | S54 family peptidase | HC | scaffold0024:1134...   469   e-132
Medtr2g081010.1 | S54 family peptidase | HC | chr2:33941444-3394...    89   1e-17
Medtr2g081010.2 | S54 family peptidase | HC | chr2:33941449-3394...    83   8e-16
Medtr2g103600.1 | S54 family peptidase | HC | chr2:44609705-4460...    67   3e-11
Medtr7g498280.1 | inactive rhomboid-like protein | HC | chr7:392...    66   7e-11
Medtr4g021755.1 | inactive rhomboid-like protein | HC | chr4:721...    64   5e-10
Medtr1g101310.1 | inactive rhomboid-like protein | HC | chr1:457...    61   4e-09
Medtr2g081010.3 | S54 family peptidase | HC | chr2:33941449-3394...    59   1e-08
Medtr7g061780.1 | S54 family peptidase | HC | chr7:22356603-2235...    56   9e-08
Medtr2g097210.1 | inactive rhomboid-like protein | HC | chr2:415...    53   6e-07
Medtr2g097210.2 | inactive rhomboid-like protein | HC | chr2:415...    51   2e-06

>Medtr0024s0260.1 | S54 family peptidase | HC |
           scaffold0024:113389-116979 | 20130731
          Length = 421

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/480 (62%), Positives = 343/480 (71%), Gaps = 70/480 (14%)

Query: 81  MAAFPICYKTRYRDQNLSTQSVIRQSDKRFMLDSDNMLRSFPSNILTKSNTQERNAPRCI 140
           MAAF +CY+T Y++                                            CI
Sbjct: 1   MAAFSVCYRTPYKNT-------------------------------------------CI 17

Query: 141 VLGRDSLHKTTTKARSQDSNLSFFQGCHSKKKRLSTVWCSGESSSIEKQLRSLDCYFGKL 200
           V G+DS++KT TK R Q         C S+     +           K+LRSLD YFGKL
Sbjct: 18  VFGKDSIYKTATKLRVQ---------CSSESTSTESE----------KKLRSLDSYFGKL 58

Query: 201 QDNAKLRTFDTSNKVMQLALH--RFKSRNELESLDEYLGKLNNAGINQESLVPFYVENRC 258
           Q   KL   D S++VM++     + +S +ELESLDEYLGKLNN GINQESLV  YVEN  
Sbjct: 59  QHKTKLHVSDASSEVMKVHQENGQSESNHELESLDEYLGKLNN-GINQESLVASYVENSK 117

Query: 259 EENLAPKQSLRNYTGRTNFRKRNTYVDLRRIEGVGGPNSGIDSQ-QHDETSSLYLIGILA 317
           +E+LAPKQ L   T RTNFRK NTYV++RRI+GV G  S IDS  Q ++TSSLYLIGILA
Sbjct: 118 DESLAPKQILSQDTQRTNFRKPNTYVNIRRIQGVSGSISAIDSHDQLNDTSSLYLIGILA 177

Query: 318 SVNIAVFLFEIASPVRNADLELFSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFHLAL 377
           SVNI VFLFEIASP+RN +LELFSLP+LYGAKINHLIMVGEWWRL+TPMFLHAGIFH+AL
Sbjct: 178 SVNIGVFLFEIASPIRNNNLELFSLPMLYGAKINHLIMVGEWWRLITPMFLHAGIFHMAL 237

Query: 378 SCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMHTPDPAVGGTGPVFAVIGAWLM 437
           SCWAL+SFGPQVCKGYGSFTFF+IYILGGVSGNL SF+HTPDP VGGTGP FA+IGAWLM
Sbjct: 238 SCWALVSFGPQVCKGYGSFTFFLIYILGGVSGNLASFLHTPDPTVGGTGPAFAIIGAWLM 297

Query: 438 YQIQNRDVIANDASENLFQKAIIITALGFILSSLGPIDEWSHFGAAFTGMAYGFLTSPAL 497
           YQIQNRDVI ND S+NLF+KAIIITALGFIL +LGPIDEWSH GAAFTGMAYGFLTSPAL
Sbjct: 298 YQIQNRDVIENDDSDNLFKKAIIITALGFILCNLGPIDEWSHSGAAFTGMAYGFLTSPAL 357

Query: 498 QLDDTSGTGREEGLKLVRRNGDSWKSLIIFTIFIAVLSSLPFFMEPPLSA----DTLEFM 553
           QLD+TS     EGLKLV + G S KSL+IF IF+ VLSSL  FM+PPL+A      LE+M
Sbjct: 358 QLDETSPGTDGEGLKLVTKYGASCKSLVIFAIFVVVLSSLLLFMDPPLNALASVVALEYM 417


>Medtr0024s0260.2 | S54 family peptidase | HC |
           scaffold0024:113404-116979 | 20130731
          Length = 356

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/408 (61%), Positives = 286/408 (70%), Gaps = 66/408 (16%)

Query: 81  MAAFPICYKTRYRDQNLSTQSVIRQSDKRFMLDSDNMLRSFPSNILTKSNTQERNAPRCI 140
           MAAF +CY+T Y++                                            CI
Sbjct: 1   MAAFSVCYRTPYKNT-------------------------------------------CI 17

Query: 141 VLGRDSLHKTTTKARSQDSNLSFFQGCHSKKKRLSTVWCSGESSSIEKQLRSLDCYFGKL 200
           V G+DS++KT TK R Q         C S+     +           K+LRSLD YFGKL
Sbjct: 18  VFGKDSIYKTATKLRVQ---------CSSESTSTESE----------KKLRSLDSYFGKL 58

Query: 201 QDNAKLRTFDTSNKVMQLALH--RFKSRNELESLDEYLGKLNNAGINQESLVPFYVENRC 258
           Q   KL   D S++VM++     + +S +ELESLDEYLGKLNN GINQESLV  YVEN  
Sbjct: 59  QHKTKLHVSDASSEVMKVHQENGQSESNHELESLDEYLGKLNN-GINQESLVASYVENSK 117

Query: 259 EENLAPKQSLRNYTGRTNFRKRNTYVDLRRIEGVGGPNSGIDSQ-QHDETSSLYLIGILA 317
           +E+LAPKQ L   T RTNFRK NTYV++RRI+GV G  S IDS  Q ++TSSLYLIGILA
Sbjct: 118 DESLAPKQILSQDTQRTNFRKPNTYVNIRRIQGVSGSISAIDSHDQLNDTSSLYLIGILA 177

Query: 318 SVNIAVFLFEIASPVRNADLELFSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFHLAL 377
           SVNI VFLFEIASP+RN +LELFSLP+LYGAKINHLIMVGEWWRL+TPMFLHAGIFH+AL
Sbjct: 178 SVNIGVFLFEIASPIRNNNLELFSLPMLYGAKINHLIMVGEWWRLITPMFLHAGIFHMAL 237

Query: 378 SCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMHTPDPAVGGTGPVFAVIGAWLM 437
           SCWAL+SFGPQVCKGYGSFTFF+IYILGGVSGNL SF+HTPDP VGGTGP FA+IGAWLM
Sbjct: 238 SCWALVSFGPQVCKGYGSFTFFLIYILGGVSGNLASFLHTPDPTVGGTGPAFAIIGAWLM 297

Query: 438 YQIQNRDVIANDASENLFQKAIIITALGFILSSLGPIDEWSHFGAAFT 485
           YQIQNRDVI ND S+NLF+KAIIITALGFIL +LGPIDEW  +   FT
Sbjct: 298 YQIQNRDVIENDDSDNLFKKAIIITALGFILCNLGPIDEWYVWLTLFT 345


>Medtr2g081010.1 | S54 family peptidase | HC |
           chr2:33941444-33945526 | 20130731
          Length = 327

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 10/194 (5%)

Query: 315 ILASVNIAVFLFEIASPVRNADLELFSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFH 374
           IL + N+   LF +A       L      L +GAK+N LI  G+ WRLVT  FLHA I H
Sbjct: 122 ILLAANV---LFYVAQLATQGKL------LSWGAKVNSLIDKGQVWRLVTSSFLHANIGH 172

Query: 375 LALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMHTPDPAVGGTGPVFAVIGA 434
           L ++C++L S GP V    G   +  IY    ++    S+     PAVG +G +F ++G+
Sbjct: 173 LMINCYSLNSVGPTVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGS 232

Query: 435 WLMYQIQNRDVIANDASENLFQKAIIITALGFILSSLGPIDEWSHFGAAFTGMAYGFLTS 494
             ++ ++++D++     +      +I   L   LSS G ID W H G    G+A  +L  
Sbjct: 233 VAVFVLRHKDLVGGGKKDLQHIAQVIALNLAIGLSSTG-IDNWGHLGGLIGGIAASWLIG 291

Query: 495 PALQLDDTSGTGRE 508
           PA + + TS  GR 
Sbjct: 292 PAWKHESTSLDGRR 305


>Medtr2g081010.2 | S54 family peptidase | HC |
           chr2:33941449-33945526 | 20130731
          Length = 290

 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 315 ILASVNIAVFLFEIASPVRNADLELFSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFH 374
           IL + N+   LF +A       L      L +GAK+N LI  G+ WRLVT  FLHA I H
Sbjct: 122 ILLAANV---LFYVAQLATQGKL------LSWGAKVNSLIDKGQVWRLVTSSFLHANIGH 172

Query: 375 LALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMHTPDPAVGGTGPVFAVIGA 434
           L ++C++L S GP V    G   +  IY    ++    S+     PAVG +G +F ++G+
Sbjct: 173 LMINCYSLNSVGPTVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGS 232

Query: 435 WLMYQIQNRDVIANDASENLFQKAIIITALGFILSSLGPIDEWSH 479
             ++ ++++D++     +      +I   L   LSS G ID W H
Sbjct: 233 VAVFVLRHKDLVGGGKKDLQHIAQVIALNLAIGLSSTG-IDNWGH 276


>Medtr2g103600.1 | S54 family peptidase | HC |
           chr2:44609705-44607548 | 20130731
          Length = 316

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 358 EWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMHT 417
           E WR +T MFLHAG+ HL  + ++LL  G ++   +G     ++Y+L G  G+L S +H 
Sbjct: 108 EVWRFITCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKIGVLYLLSGFGGSLLSILHM 167

Query: 418 PD------PAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIIITALGFILSSL 471
            D       +VG +G +F ++GA L   + N  +  N  +       ++I  L   +  +
Sbjct: 168 GDVKAPNTVSVGASGALFGLLGAMLSELLTNWTIYLNKCAA--LTSLLLIIGLNLAVGFI 225

Query: 472 GPIDEWSHFGAAFTGMAYGFL 492
             +D  +H G   +G   GF+
Sbjct: 226 PHVDNSAHIGGFLSGFFLGFV 246


>Medtr7g498280.1 | inactive rhomboid-like protein | HC |
           chr7:39278810-39283545 | 20130731
          Length = 326

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 344 LLYGAKINHLIMVGEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYI 403
           L + A +NH     + WRLV+ ++LHAGI HLA +  +L+  G ++ + +G     ++Y+
Sbjct: 103 LKWDAVVNH----HQGWRLVSCIWLHAGIIHLAANMISLVFIGIRLEQQFGFVRIGIVYL 158

Query: 404 LGGVSGNLTSFMHT-PDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIIIT 462
           + G  G++ S +      +VG +G +F ++GA L   I N  +  N  +       + I 
Sbjct: 159 VSGFGGSILSALFIRKSISVGASGALFGLLGAMLSELITNWSIYTNKVAA--LMTLLFII 216

Query: 463 ALGFILSSLGPIDEWSHFGAAFTGMAYGFLTSPALQLDDTSGTGREEGLKL 513
            +  ++  L  +D ++H G   TG   GF+  P  Q    +      G++L
Sbjct: 217 VINLVIGMLPHVDNFAHIGGFLTGFLLGFIFLPRPQFGWLAQRHVPAGVRL 267


>Medtr4g021755.1 | inactive rhomboid-like protein | HC |
           chr4:7215110-7210484 | 20130731
          Length = 399

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 360 WRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMHT-P 418
           WRL+T M+LH G+FHL  +   +L  G ++ + +G     +++++ G  G+L S +    
Sbjct: 118 WRLITCMWLHGGVFHLLANMLGILFIGIRLEQEFGFVLIGLLFVISGFGGSLLSALFIQS 177

Query: 419 DPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIIITALGFILSSLGPIDEWS 478
           + +VG +G +F ++GA L   I N  +  N  +  LF   III  +   +  L  +D ++
Sbjct: 178 NISVGASGALFGLLGAMLSELITNWSMYDNKIAA-LFTLVIIIV-VNLAIGILPHVDNFA 235

Query: 479 HFGAAFTGMAYGFL 492
           H G    G   GF+
Sbjct: 236 HIGGFLAGFLLGFV 249


>Medtr1g101310.1 | inactive rhomboid-like protein | HC |
           chr1:45761926-45764419 | 20130731
          Length = 319

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 360 WRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMHTPD 419
           WRL T ++LHAGI HL  +   L+  G ++ + +G     +IY+L G  G++ S +   +
Sbjct: 116 WRLFTCIWLHAGIIHLLSNMLCLVLIGIRLEQQFGFVKIGLIYLLSGFGGSVFSSIFIRN 175

Query: 420 P-AVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIIITALGFILSSLGPIDEWS 478
             +VG +  +F ++GA +   + N  + +N     L    +++ A+   +  L  +D  +
Sbjct: 176 SISVGASSALFGLLGAMISELLTNWTIYSNKVMALL--TLLVMIAINLTIGLLPRVDNLA 233

Query: 479 HFGAAFTGMAYGFLTSPALQLDDT 502
           H G    G   GF+  P  Q D  
Sbjct: 234 HIGGLVVGFLLGFILLPRPQYDGV 257


>Medtr2g081010.3 | S54 family peptidase | HC |
           chr2:33941449-33945526 | 20130731
          Length = 217

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 315 ILASVNIAVFLFEIASPVRNADLELFSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFH 374
           IL + N+   LF +A       L      L +GAK+N LI  G+ WRLVT  FLHA I H
Sbjct: 122 ILLAANV---LFYVAQLATQGKL------LSWGAKVNSLIDKGQVWRLVTSSFLHANIGH 172

Query: 375 LALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGN 410
           L ++C++L S GP V    G   +  IY    ++ N
Sbjct: 173 LMINCYSLNSVGPTVESFSGPRRYLAIYFASSIASN 208


>Medtr7g061780.1 | S54 family peptidase | HC |
           chr7:22356603-22354034 | 20130731
          Length = 335

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 339 LFSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTF 398
           L +L  +    ++ ++   + WRL+T M+LH G+FHL  +   +L  G ++ + +G    
Sbjct: 81  LLTLTSMGALDVHQVVYRHQGWRLMTCMWLHGGVFHLLANMLGILVVGIRLEQDFGFVLI 140

Query: 399 FMIYILGGVSGNLTSFMHTPDP-AVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQK 457
            ++Y++ G  G+L S +      +VG +  +F ++GA L   I N  +        +   
Sbjct: 141 GVLYVISGFGGSLLSSLFIQQRISVGASSALFGLLGAMLSELITNWSIYEKRLGTLITLV 200

Query: 458 AIIITALGFILSSLGPIDEWSHFGAAFTGMAYGFL 492
           +II+  L   +     +D ++H G   +G   GF+
Sbjct: 201 SIIVINLA--VGIFPHVDNFAHIGGFISGFLLGFV 233


>Medtr2g097210.1 | inactive rhomboid-like protein | HC |
           chr2:41509279-41506033 | 20130731
          Length = 383

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 340 FSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFF 399
           F+L  +   +++ ++   E WRLV+ ++LH G  H+  +  +LL  G ++ + +G     
Sbjct: 102 FTLQKMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIG 161

Query: 400 MIYILGGVSGNLTS--FMHTPDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQK 457
            +Y++ G  G+L S  F+ T   +VG +G +F ++G  L     N  + AN  +  L   
Sbjct: 162 FLYVISGFGGSLLSSLFIQT-GISVGASGALFGLLGGMLSELFINWTIYANKMAALL--T 218

Query: 458 AIIITALGFILSSLGPIDEWSH 479
            III  +   +  L  +D ++H
Sbjct: 219 LIIIVVINLAVGVLPHVDNFAH 240


>Medtr2g097210.2 | inactive rhomboid-like protein | HC |
           chr2:41509232-41506033 | 20130731
          Length = 300

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 340 FSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFF 399
           F+L  +   +++ ++   E WRLV+ ++LH G  H+  +  +LL  G ++ + +G     
Sbjct: 102 FTLQKMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIG 161

Query: 400 MIYILGGVSGNLTS--FMHTPDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQK 457
            +Y++ G  G+L S  F+ T   +VG +G +F ++G  L     N  + AN  +  L   
Sbjct: 162 FLYVISGFGGSLLSSLFIQT-GISVGASGALFGLLGGMLSELFINWTIYANKMAALL--T 218

Query: 458 AIIITALGFILSSLGPIDEWSH 479
            III  +   +  L  +D ++H
Sbjct: 219 LIIIVVINLAVGVLPHVDNFAH 240