Miyakogusa Predicted Gene

Lj0g3v0329549.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0329549.1 Non Characterized Hit- tr|I1MS13|I1MS13_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56335 PE,77.2,0,no
description,NULL; Rhomboid-like,NULL; Ran BP2/NZF zinc
finger-like,NULL; ZF_RANBP2_1,Zinc finger,,CUFF.22443.1
         (330 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123573.1 | rhomboid-like protein | HC | chr4:51389558-513...   387   e-108
Medtr7g107390.1 | rhomboid family protein | HC | chr7:43813742-4...    52   6e-07
Medtr7g107390.2 | rhomboid family protein | HC | chr7:43813742-4...    52   6e-07

>Medtr4g123573.1 | rhomboid-like protein | HC |
           chr4:51389558-51390903 | 20130731
          Length = 335

 Score =  387 bits (993), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/329 (60%), Positives = 234/329 (71%), Gaps = 13/329 (3%)

Query: 1   MEVRIGRRVSRGMLPLLALHTFAEYYRSDRKPPVTAALIAANTLIHLRPSFLEPFIPPID 60
           MEVRIGR +SRGMLPLLALHTF EYYRS+ KPPVTAALIAANT+I+LRPSFL   IPPID
Sbjct: 1   MEVRIGRGISRGMLPLLALHTFTEYYRSNTKPPVTAALIAANTVIYLRPSFLRHLIPPID 60

Query: 61  QVWFNPHLIVKNKDLKRFFLSAFYHIGEPHLVYNMLSLLWKGMQLETAMGSAEFASMVAS 120
           +V FN HLI+KNKDLKRFFLSAFYH+GEPHLV+NM+SLLWKG+ LE+++GS +FASM+AS
Sbjct: 61  EVLFNSHLILKNKDLKRFFLSAFYHLGEPHLVFNMISLLWKGIHLESSIGSLQFASMIAS 120

Query: 121 LLALSQGVTXXXXXXXXXFFDYGRPYYYEYAVGFSGVLFALKVVLNSQSENFTQVYGVIV 180
           LLALSQ +          FFDY R YYYEYA GFSGVLFA+K+VLNSQS+++T VYGV++
Sbjct: 121 LLALSQSINLVLSKSLFVFFDYDR-YYYEYAAGFSGVLFAMKIVLNSQSDDYTNVYGVLI 179

Query: 181 PSRYAAWAELFLIQMFVPGVSFXXXXXXXXXXXXXXXXXXXXXXXDPVVSLMRGVGAAVN 240
           PSRYAAWAEL LIQMFVP VSF                       +P+ S++RG  + +N
Sbjct: 180 PSRYAAWAELILIQMFVPNVSFLGHLSGILAGLVYLRFRRNFSGSNPLNSIVRGFNSVLN 239

Query: 241 WPXXXXXXXXXXXXXXXXXXXAVGGDRTGRNA------WRCQACTFDNWGLLNECEMCGT 294
           WP                    VG  RTGRNA      WRCQACT+DN GL+N CEMCGT
Sbjct: 240 WPVKFFRDLFGFRRERITGRGTVG--RTGRNAAQVAADWRCQACTYDNSGLMNVCEMCGT 297

Query: 295 RRGGSGGLASFPRSRR---DSDGLPVDEL 320
            R G GG +S   +RR   DSDGL +DEL
Sbjct: 298 SRVGGGG-SSDEMNRRDYYDSDGLSLDEL 325


>Medtr7g107390.1 | rhomboid family protein | HC |
           chr7:43813742-43820538 | 20130731
          Length = 409

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 60  DQVWFNPHLIVKNKDLKRFFLSAFYHIGEPHLVYNMLSLLWKGMQLETAMGSAEFASMVA 119
            ++ F P  +V    + R + +  +H    H+++NM++L+  G +LE  MGS      V 
Sbjct: 55  SEICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLL-YVT 113

Query: 120 SLLALSQGVTXXXXXXXXXFFDYGRPYYY--EYAVGFSGVLFALKVVLNSQSENFTQ-VY 176
            LLA S  +          +       Y   E A+GFSGVLF++ V+  S S   ++ V+
Sbjct: 114 ILLATSNAIIHVFIALLVAYNPILTNGYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVF 173

Query: 177 GVI-VPSRYAAWAELFLIQMFVPGVSF 202
           G+  VP+++ A+  L + Q+ +  VS 
Sbjct: 174 GLFNVPAKWYAFFLLVVFQLLMQNVSL 200


>Medtr7g107390.2 | rhomboid family protein | HC |
           chr7:43813742-43818623 | 20130731
          Length = 358

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 60  DQVWFNPHLIVKNKDLKRFFLSAFYHIGEPHLVYNMLSLLWKGMQLETAMGSAEFASMVA 119
            ++ F P  +V    + R + +  +H    H+++NM++L+  G +LE  MGS      V 
Sbjct: 55  SEICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLL-YVT 113

Query: 120 SLLALSQGVTXXXXXXXXXFFDYGRPYYY--EYAVGFSGVLFALKVVLNSQSENFTQ-VY 176
            LLA S  +          +       Y   E A+GFSGVLF++ V+  S S   ++ V+
Sbjct: 114 ILLATSNAIIHVFIALLVAYNPILTNGYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVF 173

Query: 177 GVI-VPSRYAAWAELFLIQMFVPGVSF 202
           G+  VP+++ A+  L + Q+ +  VS 
Sbjct: 174 GLFNVPAKWYAFFLLVVFQLLMQNVSL 200