Miyakogusa Predicted Gene

Lj0g3v0329339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0329339.1 Non Characterized Hit- tr|K4BXE5|K4BXE5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,37.5,6e-18,SUBFAMILY NOT NAMED,NULL; SOX TRANSCRIPTION
FACTOR,NULL; seg,NULL,CUFF.22423.1
         (413 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g054680.1 | phytochrome and flowering time regulatory prot...   439   e-123
Medtr1g013000.1 | mediator of RNA polymerase II transcription su...   207   1e-53
Medtr5g054690.1 | hypothetical protein | HC | chr5:22529114-2253...   162   7e-40
Medtr5g054690.2 | hypothetical protein | HC | chr5:22529114-2253...   160   1e-39
Medtr5g054690.3 | hypothetical protein | HC | chr5:22529114-2253...   160   2e-39
Medtr5g054690.4 | hypothetical protein | HC | chr5:22529114-2253...   160   2e-39
Medtr7g077950.1 | hypothetical protein | LC | chr7:29441865-2943...   126   4e-29
Medtr6g085080.1 | mediator complex subunit 25 von willebrand fac...    51   2e-06

>Medtr5g054680.1 | phytochrome and flowering time regulatory protein
           | HC | chr5:22512525-22526575 | 20130731
          Length = 820

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/380 (65%), Positives = 276/380 (72%), Gaps = 18/380 (4%)

Query: 1   MVSGPAFPHNSSVPRAASSSPGVPNFQTSSPSSASQDLMTSTENGQDTKPMASMLQPPLG 60
           + SGPAF HN SVPRA  +  GVP+ QTSSPSS SQD+MTS EN  DTKP+ SMLQP + 
Sbjct: 296 VTSGPAFSHNPSVPRATGTGLGVPSLQTSSPSSVSQDIMTSNENAMDTKPIVSMLQP-IR 354

Query: 61  PVHPAQVNVNSWNNLSQAPQVMNSAALSGGTSMGLPSMGQTPVAMHMSNMISSGMASSVP 120
           PV+PAQ NVN  NNLSQA QVM   ALSGGTSMGL SMGQTPVAMHMSNMISSG  SS P
Sbjct: 355 PVNPAQANVNILNNLSQARQVM---ALSGGTSMGLQSMGQTPVAMHMSNMISSGTTSSGP 411

Query: 121 AAQNAFXXXXXXXXXXXXXXXLIAPAQVGQXXXXXXXXXXXXXXXXXXXXGISQPLSNLQ 180
             QN F               L A AQVGQ                    GISQP++NLQ
Sbjct: 412 TGQNVFSSGPSVITSSGS---LTASAQVGQNSGLSSLTSATSNSSPNT--GISQPIANLQ 466

Query: 181 GAVSMGQRVPGMSQGNISGAQVVQGRVTMNQNV----GPSVVSSGNGTMIPTPGMSLQVQ 236
           G VSMGQ+VP M+ GN+SGAQ+VQG V MNQNV    G S VSSG G MIPTPG+  QVQ
Sbjct: 467 GGVSMGQQVPTMNPGNLSGAQMVQGGVNMNQNVINGLGQSGVSSGTGAMIPTPGIPQQVQ 526

Query: 237 SGVQPLGNNAAP-KMTLPQQTSGGMQPTQSKYIKIWEGSLCGIKQEQPVFITKLEGYRNV 295
           SG+QPL NNAA   MTL QQT+     +QSKYIK+WEGSL G +Q QPVFITKLEGYR+ 
Sbjct: 527 SGMQPLVNNAAAANMTLTQQTAS----SQSKYIKVWEGSLSGQRQGQPVFITKLEGYRSS 582

Query: 296 SAPETIAENWPPVMQMVRLIPQDHMNDEHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVI 355
           SA ET+A NWPPVMQ+VRLI QDHMN++ +VGKADF+VFR MNPH F GQLQEKKLCAVI
Sbjct: 583 SASETLAANWPPVMQIVRLISQDHMNNKQYVGKADFLVFRAMNPHGFLGQLQEKKLCAVI 642

Query: 356 PLPSQTLLLSISNKASRLIG 375
            LPSQTLLLS+S+KA RLIG
Sbjct: 643 QLPSQTLLLSVSDKACRLIG 662


>Medtr1g013000.1 | mediator of RNA polymerase II transcription
           subunit 25 | LC | chr1:2786873-2785071 | 20130731
          Length = 600

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 134/204 (65%), Gaps = 37/204 (18%)

Query: 173 SQPLSNLQGAVSMGQRVPGMSQGNISGAQVVQGRVTMNQNVGPSVVSSGNGTMIPTPGMS 232
           SQP +N+QGAVSMGQ+VP                                  MIPTPGM 
Sbjct: 333 SQPSANIQGAVSMGQQVP---------------------------------RMIPTPGMP 359

Query: 233 LQVQSGVQPLGNNAAP-KMTLPQQTSGGMQPTQSKYIKIWEGSLCGIKQEQPVFITKLEG 291
            QVQSG+QPL NNAA   M L QQT+    P   KYIK WEG+L G++Q QPVFI+KLEG
Sbjct: 360 QQVQSGMQPLVNNAAATNMPLSQQTTSAQPP---KYIKAWEGTLTGLRQGQPVFISKLEG 416

Query: 292 YRNVSAPETIAENWPPVMQMVRLIPQDHMNDEHFVGKADFVVFRVMNPHRFFGQLQEKKL 351
           YR+ SA ET+  +WP  MQ+ RLI QDHMN++ ++GKADF+VFR MN H F GQL+EKK 
Sbjct: 417 YRSFSASETLTADWPAGMQIGRLISQDHMNNKQYIGKADFLVFRAMNQHGFLGQLKEKKQ 476

Query: 352 CAVIPLPSQTLLLSISNKASRLIG 375
           CAVI LPSQTLL+S+S+K  RLIG
Sbjct: 477 CAVIQLPSQTLLMSVSDKPCRLIG 500


>Medtr5g054690.1 | hypothetical protein | HC |
           chr5:22529114-22535637 | 20130731
          Length = 358

 Score =  162 bits (409), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 86/106 (81%)

Query: 270 IWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMNDEHFVGKA 329
           IWEGSL G KQ +P+FITKLEGYR  SA ET+A NWPP M +VR+I QDHMN++ +VG+A
Sbjct: 28  IWEGSLYGRKQGEPIFITKLEGYRRSSASETLAANWPPEMHIVRIISQDHMNNKKYVGEA 87

Query: 330 DFVVFRVMNPHRFFGQLQEKKLCAVIPLPSQTLLLSISNKASRLIG 375
           DF+VFR  N H F G LQEKKLCAVI L SQTLLLS+S+KA RL+G
Sbjct: 88  DFLVFRARNTHGFLGLLQEKKLCAVIQLQSQTLLLSVSDKACRLMG 133



 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 91/114 (79%), Gaps = 2/114 (1%)

Query: 264 QSKYIKIWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMND- 322
           QS YI +WEGSL G++  QP FI+KLE YR+ S+ ET+  NW P MQ+V+LIPQDHMN+ 
Sbjct: 167 QSNYISVWEGSLLGLRHGQPKFISKLEAYRSSSSSETLVANWSPEMQIVQLIPQDHMNNL 226

Query: 323 EHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVIPLPSQTLLLSISNKA-SRLIG 375
           + +VG ADF+VFR MNPH F GQLQEKKLCAVI LPSQTLLLS+S+ A  RLIG
Sbjct: 227 QQYVGNADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDIACCRLIG 280


>Medtr5g054690.2 | hypothetical protein | HC |
           chr5:22529114-22535637 | 20130731
          Length = 329

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 91/114 (79%), Gaps = 2/114 (1%)

Query: 264 QSKYIKIWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMND- 322
           QS YI +WEGSL G++  QP FI+KLE YR+ S+ ET+  NW P MQ+V+LIPQDHMN+ 
Sbjct: 138 QSNYISVWEGSLLGLRHGQPKFISKLEAYRSSSSSETLVANWSPEMQIVQLIPQDHMNNL 197

Query: 323 EHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVIPLPSQTLLLSISNKA-SRLIG 375
           + +VG ADF+VFR MNPH F GQLQEKKLCAVI LPSQTLLLS+S+ A  RLIG
Sbjct: 198 QQYVGNADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDIACCRLIG 251



 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 270 IWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMNDEHFVGKA 329
           IWEGSL G KQ +P+FITKLEGYR  SA ET+A NWPP M +VR+I QDHMN++ +VG+A
Sbjct: 28  IWEGSLYGRKQGEPIFITKLEGYRRSSASETLAANWPPEMHIVRIISQDHMNNKKYVGEA 87

Query: 330 DFVVFRVMNPHRFFGQLQEKKLCAVI 355
           DF+VFR  N H F G LQEKKL  ++
Sbjct: 88  DFLVFRARNTHGFLGLLQEKKLDKLV 113


>Medtr5g054690.3 | hypothetical protein | HC |
           chr5:22529114-22535637 | 20130731
          Length = 347

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 91/114 (79%), Gaps = 2/114 (1%)

Query: 264 QSKYIKIWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMND- 322
           QS YI +WEGSL G++  QP FI+KLE YR+ S+ ET+  NW P MQ+V+LIPQDHMN+ 
Sbjct: 156 QSNYISVWEGSLLGLRHGQPKFISKLEAYRSSSSSETLVANWSPEMQIVQLIPQDHMNNL 215

Query: 323 EHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVIPLPSQTLLLSISNKA-SRLIG 375
           + +VG ADF+VFR MNPH F GQLQEKKLCAVI LPSQTLLLS+S+ A  RLIG
Sbjct: 216 QQYVGNADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDIACCRLIG 269



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 59/72 (81%)

Query: 304 NWPPVMQMVRLIPQDHMNDEHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVIPLPSQTLL 363
           NWPP M +VR+I QDHMN++ +VG+ADF+VFR  N H F G LQEKKLCAVI L SQTLL
Sbjct: 51  NWPPEMHIVRIISQDHMNNKKYVGEADFLVFRARNTHGFLGLLQEKKLCAVIQLQSQTLL 110

Query: 364 LSISNKASRLIG 375
           LS+S+KA RL+G
Sbjct: 111 LSVSDKACRLMG 122


>Medtr5g054690.4 | hypothetical protein | HC |
           chr5:22529114-22535637 | 20130731
          Length = 318

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 91/114 (79%), Gaps = 2/114 (1%)

Query: 264 QSKYIKIWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMND- 322
           QS YI +WEGSL G++  QP FI+KLE YR+ S+ ET+  NW P MQ+V+LIPQDHMN+ 
Sbjct: 127 QSNYISVWEGSLLGLRHGQPKFISKLEAYRSSSSSETLVANWSPEMQIVQLIPQDHMNNL 186

Query: 323 EHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVIPLPSQTLLLSISNKA-SRLIG 375
           + +VG ADF+VFR MNPH F GQLQEKKLCAVI LPSQTLLLS+S+ A  RLIG
Sbjct: 187 QQYVGNADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDIACCRLIG 240



 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 40/52 (76%)

Query: 304 NWPPVMQMVRLIPQDHMNDEHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVI 355
           NWPP M +VR+I QDHMN++ +VG+ADF+VFR  N H F G LQEKKL  ++
Sbjct: 51  NWPPEMHIVRIISQDHMNNKKYVGEADFLVFRARNTHGFLGLLQEKKLDKLV 102


>Medtr7g077950.1 | hypothetical protein | LC |
           chr7:29441865-29438594 | 20130731
          Length = 192

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 99/157 (63%), Gaps = 11/157 (7%)

Query: 221 GNGTMIPTPGMSLQ-VQSGVQPLGNNAAPKMTLPQQTSGGMQPTQSKYIKIWEGSLCGIK 279
            NG++  T GM  Q V+S +QPL N+A    T  QQT+      QSKY + W+GSL  ++
Sbjct: 35  ANGSI--TTGMPQQEVESDMQPLENDA----TAAQQTASS---AQSKYTRFWKGSLTELR 85

Query: 280 QEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMN-DEHFVGKADFVVFRVMN 338
           Q Q V ITKLE  R+ SA +T+  NWP  MQ+VRLI Q+ M   +    K D +VFR +N
Sbjct: 86  QGQRVLITKLECSRSSSASKTLTTNWPSDMQIVRLISQERMTIHKQHARKEDLLVFRPVN 145

Query: 339 PHRFFGQLQEKKLCAVIPLPSQTLLLSISNKASRLIG 375
           P R    L+EKKL AVI LPSQTLLL +S K ++LIG
Sbjct: 146 PGRSLSHLKEKKLGAVIQLPSQTLLLFVSEKPNQLIG 182


>Medtr6g085080.1 | mediator complex subunit 25 von willebrand factor
           type A protein | LC | chr6:32077390-32069017 | 20130731
          Length = 713

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 266 KYIKIWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDH-MNDEH 324
            Y++ WEG+L G      + I + + +R  S P T+  +WP  +++   +PQ   ++   
Sbjct: 591 DYVQTWEGTLAGKITSSRITILRAKAFRKSSTPPTLTLDWPGRLEISNYLPQKALLHTRR 650

Query: 325 FVGKADFVVFRVMNPHR--FFGQLQEKKLCAVIPLPSQTLLLSISNKASRLIG 375
           F     ++ F V        +   + +  CA + L  QT++LS + +    +G
Sbjct: 651 FSQPIHYLFFHVAKYSNVDLYNHCKTRNNCAKVDLQFQTIILSPTEREPLFVG 703