Miyakogusa Predicted Gene
- Lj0g3v0327789.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0327789.2 Non Characterized Hit- tr|I1MAK8|I1MAK8_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,68.89,0,no
description,Ribonuclease II/R; RIBONUCLEASE_II,Ribonuclease II/R,
conserved site; seg,NULL; SUBFA,CUFF.22317.2
(1086 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g059080.1 | ribonuclease II family protein | HC | chr5:243... 1340 0.0
Medtr5g058810.1 | ribonuclease II family protein | HC | chr5:242... 1021 0.0
Medtr8g073170.1 | exosome complex exonuclease RRP44 | HC | chr8:... 303 8e-82
Medtr4g021750.1 | ribonuclease II | HC | chr4:7207202-7191578 | ... 82 4e-15
Medtr4g021750.3 | ribonuclease II | HC | chr4:7207197-7191693 | ... 82 4e-15
Medtr4g021750.2 | ribonuclease II | HC | chr4:7203751-7191578 | ... 82 4e-15
>Medtr5g059080.1 | ribonuclease II family protein | HC |
chr5:24380512-24374112 | 20130731
Length = 1107
Score = 1340 bits (3468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/1140 (61%), Positives = 835/1140 (73%), Gaps = 88/1140 (7%)
Query: 1 MKAA-VEGSSMGKKRRSN------------RRTKQNPSSFSASEVKETPGGSSECLGKND 47
MKA VEGS +G +R + RR KQNP S SASEV E G S EC GKN
Sbjct: 1 MKATTVEGSMVGGERFDDVEKDKKKKRRSNRRNKQNPPS-SASEVNEAIGVSPECSGKNG 59
Query: 48 TPVPSTASLSNPLKQQGTNVYSTNEQVLPQASNFVFGSVPPMLINEHVQPV-LQNIQMPG 106
TPV + S+SN L + S+P + N V P +Q + +
Sbjct: 60 TPVQPSGSVSNSLAPSDDPI-----------------SIPLIPYNGPVAPADMQKMLLHL 102
Query: 107 GGIDSISLSDPIGCRGSSGRNSK------TKYPLG---KYFSPHWSQEAVEKALERGDVL 157
+ + +P+GC SSG N K +K+ L YFSPHWS E VEKALERGDV
Sbjct: 103 RTLVLQNSPEPVGCLESSGTNEKKDSARYSKFGLSGQRNYFSPHWSVEVVEKALERGDVF 162
Query: 158 KARFHVNVHNTLEAYCKIDGVPTDVLINGFLAQNRAVEGDIVAVKIDPLPLWTKMKGPIV 217
KA F VN HN EAYC IDGVPTD+LI G AQNRAVEGDIVA+KIDPLPLWTKMKGP V
Sbjct: 163 KATFRVNAHNRTEAYCSIDGVPTDILIVGAPAQNRAVEGDIVAIKIDPLPLWTKMKGPNV 222
Query: 218 NGNNMATLESCNL-VEDDGAGVNNCKGIGKVDADYESAHSRSPGKNKEDSDDHSSTPDKS 276
NN A LE CNL VED+ AG NNC+GI KVDAD+E + G+NKE+S D+SS P +S
Sbjct: 223 ANNNTAVLEGCNLLVEDNIAGDNNCEGIEKVDADHEYS-----GQNKEESFDNSS-PYRS 276
Query: 277 SPFPETRCIYEDNTSQGSANHINPLGLASHDGSDGTHCAASYSLEMNSCNGQGKVINAVE 336
PFPE R IYE+NT+QGS NH++ +GL D +DG +C + S+++NS +GQ +V+NAVE
Sbjct: 277 YPFPEKRYIYENNTTQGSPNHLSLIGLTGRDNNDGPNCDSPASIKINSGSGQSEVMNAVE 336
Query: 337 KMCLLVKSFPSKRPTGRVVAIVERSPRREGIVGHLNDIYCLCCKTYSREITK-------- 388
K+CLLV SFPSKRPTGRVVA++ERSPRRE IVGHLN + +S+EI K
Sbjct: 337 KICLLVNSFPSKRPTGRVVAVIERSPRRECIVGHLN----VKQWVFSQEINKKDPRKNKN 392
Query: 389 -LCEPEYFQLTPIDPKFPSVIILMRDLPECLKKRWECADMTMERDLVAVQIDDWIEERPF 447
+ E EY QLTPIDPKFP++++L+RDLP+ +K R + D +E+DLVA QI DW EE PF
Sbjct: 393 SVSEHEYIQLTPIDPKFPNIMLLVRDLPKSIKIRLKNGDAAIEKDLVAAQIVDWFEESPF 452
Query: 448 PEGHVLHIFGRGGEVQPQLDAILFQNAICLSEFSPEALSCLPCVPWELPPKEIKSRKDLR 507
PEG +L FGRG E+QP LD+ILF+NAICLSEFS EALSCLP WELP KE++SR DLR
Sbjct: 453 PEGDILQHFGRGSEIQPNLDSILFKNAICLSEFSAEALSCLPHATWELPLKELQSRTDLR 512
Query: 508 NLCVFTIDPSTATDLDDALSIEKLPSGNYRVGVHIADVSYFVLPHTALDREAQSRSTSVY 567
NLC+F+IDPSTATDLDDALSIEKLP+GNYRVG+HIADVSYFVLP TALD EAQ RSTSVY
Sbjct: 513 NLCIFSIDPSTATDLDDALSIEKLPNGNYRVGIHIADVSYFVLPDTALDVEAQFRSTSVY 572
Query: 568 MSQRKLPMLPALFSENIGSLNPGVDRLTVSILLDITDAGDVVDRWVGRAVIQSCCKLSYE 627
+ Q+KLPML AL SENIGSLNPGVDRL S+LLD+ AGDVVDRW+GR VIQSCCKLSYE
Sbjct: 573 LLQKKLPMLSALISENIGSLNPGVDRLAFSMLLDLNVAGDVVDRWIGRTVIQSCCKLSYE 632
Query: 628 HAQFIID----CQISDFYGEDFPKVHGRFEWPDVISSLKSLYAISDVLKHKRFTDGALRL 683
HAQ IID + S F+ + +PK+HGRF WPDVI+SLKSLY IS+VLKHKRF GALRL
Sbjct: 633 HAQDIIDGAFNFESSSFHEDGYPKLHGRFGWPDVITSLKSLYEISNVLKHKRFAGGALRL 692
Query: 684 DNPKVAILFDENGIPCDITFSERKESNLLVEEYMLLANRTAAEVICRAYPDIALLRRHPE 743
D PK+ IL DENGIP + TFSE+KESNLL+EEYMLLAN TAAE+ICRAYPD+ALLRRHPE
Sbjct: 693 DKPKIVILSDENGIPYNSTFSEQKESNLLIEEYMLLANTTAAEIICRAYPDVALLRRHPE 752
Query: 744 PNMRKLRELMAFCEKHGLELNTSSSGQFHRSLEKAKEKLKDDPVLYDILISYATKPMLLA 803
PNMRKLRE AFC+KHGL L+TSSSG SLE+ KEKLKDDPVLYDILISYA+K M A
Sbjct: 753 PNMRKLREFTAFCQKHGLNLDTSSSGHIRSSLEQMKEKLKDDPVLYDILISYASKLMQSA 812
Query: 804 SYFCSGDLKDNEHEWGHYALAVPLYTHFTSPLRRYPDIIVHRTLLAAIEVEELYMKHQKV 863
SYFCS DLKDNEHEWGHYALAVPLYTHFTSPLRRY DI+VHRTLLA IE EE+Y+K
Sbjct: 813 SYFCSSDLKDNEHEWGHYALAVPLYTHFTSPLRRYADIVVHRTLLATIEAEEIYLK---- 868
Query: 864 MKVNKEVRMQKKCFTGINFEKNAAESMEGREALAAASMKHGVPCSEVLADIAAYCNERKL 923
+V K++ ++K+CFTGINF+K AES+E REAL AA++KH VP +E+LADIAA+CN+RKL
Sbjct: 869 -QVGKKMGVEKRCFTGINFDKKTAESVECREALMAAALKHRVPSAEILADIAAHCNDRKL 927
Query: 924 ASRNVKDACDKLYIWFLLKNKGALISEARVMGLGPRFMSIYIQKLAIERRINYAEVEGLK 983
AS+ VKD+C++LY+WFLLK + ++SEARV+GLGP+FMSIYIQKLA+E+RI Y EVEGL
Sbjct: 928 ASKYVKDSCERLYMWFLLKQQKVILSEARVLGLGPKFMSIYIQKLAVEKRIYYDEVEGLT 987
Query: 984 VEWLEATSTLVLSMNP-KHAFRKGS-----------------PNMLRAFEEVALVTXXXX 1025
EWL+ATSTLVLSM+P K A R+G+ M + + A+
Sbjct: 988 AEWLDATSTLVLSMSPNKRANRRGNWRALSESVMLACPYDLKVTMDNSNQNDAIEVDAAV 1047
Query: 1026 XXXXXXXXXXXXXXXXEIEPAVFPLTVRVLSTIPVVLLPVGGDYGPVDIRVRLYMSSYFG 1085
EIEP+ FPLTV +LSTIPV L VGGD GP+D VRLYM+SYFG
Sbjct: 1048 SDTDKHHDSTSETSETEIEPSFFPLTVHLLSTIPVALHAVGGDDGPLDFGVRLYMTSYFG 1107
>Medtr5g058810.1 | ribonuclease II family protein | HC |
chr5:24281512-24288073 | 20130731
Length = 855
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/922 (60%), Positives = 651/922 (70%), Gaps = 107/922 (11%)
Query: 1 MKAA-VEGSSMGKKRRSN------------RRTKQNPSSFSASEVKETPGGSSECLGKND 47
MKA VEGS +G +R + RR KQNP S SASEV E G S EC GKN
Sbjct: 1 MKATTVEGSMVGGERFDDVEKDKKKKRRSNRRNKQNPPS-SASEVNEAIGVSPECSGKNG 59
Query: 48 TPVPSTASLSNPLKQQGTNVYSTNEQVLPQASNFVFGSVPPMLINEHVQPV-LQNIQMPG 106
TPV + S+SN L + S+P + N V P +Q + +
Sbjct: 60 TPVQPSGSVSNSLAPSDDPI-----------------SIPLIPYNGPVAPADMQKMLLHL 102
Query: 107 GGIDSISLSDPIGCRGSSGRNSK------TKYPLG---KYFSPHWSQEAVEKALERGDVL 157
+ + +P+GC SSG N K +K+ L YFSPHWS E VEKALERGDV
Sbjct: 103 RTLVLQNSPEPVGCLESSGTNEKKDSARYSKFGLSGQRNYFSPHWSVEVVEKALERGDVF 162
Query: 158 KARFHVNVHNTLEAYCKIDGVPTDVLINGFLAQNRAVEGDIVAVKIDPLPLWTKMKGPIV 217
KA F VN HN EAYC IDGVPTD+LI G AQNRAVEGDIVA+KIDPLPLWTKMKGP V
Sbjct: 163 KATFRVNAHNRTEAYCSIDGVPTDILIVGAPAQNRAVEGDIVAIKIDPLPLWTKMKGPNV 222
Query: 218 NGNNMATLESCNL-VEDDGAGVNNCKGIGKVDADYESAHSRSPGKNKEDSDDHSSTPDKS 276
NN A LE CNL VED+ AG NNC+GI KVDAD+E + G+NKE+S D+SS P +S
Sbjct: 223 ANNNTAVLEGCNLLVEDNIAGDNNCEGIEKVDADHEYS-----GQNKEESFDNSS-PYRS 276
Query: 277 SPFPETRCIYEDNTSQGSANHINPLGLASHDGSDGTHCAASYSLEMNSCNGQGKVINAVE 336
PFPE R IYE+NT+QGS NH++ +GL D +DG +C + S+++NS +GQ +V+NAVE
Sbjct: 277 YPFPEKRYIYENNTTQGSPNHLSLIGLTGRDNNDGPNCDSPASIKINSGSGQSEVMNAVE 336
Query: 337 KMCLLVKSFPSKRPTGRVVAIVERSPRREGIVGHLNDIYCLCCKTYSREITK-------- 388
K+CLLV SFPSKRPTGRVVA++ERSPRRE IVGHLN + +S+EI K
Sbjct: 337 KICLLVNSFPSKRPTGRVVAVIERSPRRECIVGHLN----VKQWVFSQEINKKDPRKNKN 392
Query: 389 -LCEPEYFQLTPIDPKFPSVIILMRDLPECLKKRWECADMTMERDLVAVQIDDWIEERPF 447
+ E EY QLTPIDPKFP++++L+RDLP+ +K R + D +E+DLVA QI DW EE PF
Sbjct: 393 SVSEHEYIQLTPIDPKFPNIMLLVRDLPKSIKIRLKNGDAAIEKDLVAAQIVDWFEESPF 452
Query: 448 PEGHVLHIFGRGGEVQPQLDAILFQNAICLSEFSPEALSCLPCVPWELPPKEIKSRKDLR 507
PEG +L FGRG E+Q C E + E
Sbjct: 453 PEGDILQHFGRGSEIQN-----------CKVELTLE------------------------ 477
Query: 508 NLCVF-TIDPSTATDLDDALSIEKLPSGNYRVGVHIADVSYFVLPHTALDREAQSRSTSV 566
+C F IDPSTATDLDDALSIEKLP+GNYRVG+HIADVSYFVLP TALD EAQ RSTSV
Sbjct: 478 -ICAFFLIDPSTATDLDDALSIEKLPNGNYRVGIHIADVSYFVLPDTALDVEAQFRSTSV 536
Query: 567 YMSQRKLPMLPALFSENIGSLNPGVDRLTVSILLDITDAGDVVDRWVGRAVIQSCCKLSY 626
Y+ Q+KLPML AL SENIGSLNPGVDRL S+LLD+ AGDVVDRW+GR VIQSCCKLSY
Sbjct: 537 YLLQKKLPMLSALISENIGSLNPGVDRLAFSMLLDLNVAGDVVDRWIGRTVIQSCCKLSY 596
Query: 627 EHAQFIID----CQISDFYGEDFPKVHGRFEWPDVISSLKSLYAISDVLKHKRFTDGALR 682
EHAQ IID + S F+ + +PK+HGRF WPDVI+SLKSLY IS+VLKHKRF GALR
Sbjct: 597 EHAQDIIDGAFNFESSSFHEDGYPKLHGRFGWPDVITSLKSLYEISNVLKHKRFAGGALR 656
Query: 683 LDNPKVAILFDENGIPCDITFSERKESNLLVEEYMLLANRTAAEVICRAYPDIALLRRHP 742
LD PK+ IL DENGIP + TFSE+KESNLL+EEYMLLAN TAAE+ICRAYPD+ALLRRHP
Sbjct: 657 LDKPKIVILSDENGIPYNSTFSEQKESNLLIEEYMLLANTTAAEIICRAYPDVALLRRHP 716
Query: 743 EPNMRKLRELMAFCEKHGLELNTSSSGQFHRSLEKAKEKLKDDPVLYDILISYATKPMLL 802
EPNMRKLRE AFC+KHGL L+TSSSG SLE+ KEKLKDDPVLYDILISYA+K M
Sbjct: 717 EPNMRKLREFTAFCQKHGLNLDTSSSGHIRSSLEQMKEKLKDDPVLYDILISYASKLMQS 776
Query: 803 ASYFCSGDLKDNEHEWGHYALAVPLYTHFTSPLRRYPDIIVHRTLLAAIEVEELYMKHQK 862
ASYFCS DLKDNEHEWGHYALAVPLYTHFTSPLRRY DI+VHRTLLA IE EE+Y+K
Sbjct: 777 ASYFCSSDLKDNEHEWGHYALAVPLYTHFTSPLRRYADIVVHRTLLATIEAEEIYLK--- 833
Query: 863 VMKVNKEVRMQKKCFTGINFEK 884
+V K++ ++K+CFTGINF+K
Sbjct: 834 --QVGKKMGVEKRCFTGINFDK 853
>Medtr8g073170.1 | exosome complex exonuclease RRP44 | HC |
chr8:30968594-30949877 | 20130731
Length = 934
Score = 303 bits (775), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 184/513 (35%), Positives = 277/513 (53%), Gaps = 46/513 (8%)
Query: 347 SKRPTGRVVAIVERSPRREGIVGHLNDIYCLCCKTYSREITKLCEPEYFQLTPIDPKFPS 406
S RP+G +V I++R+ + + + + SR + Y D +FP
Sbjct: 335 SGRPSGCIVGIIKRNWQ-----SYCGSLEPMPIPGGSRGVA------YALFVSKDRRFPK 383
Query: 407 VIILMRDLPECLKKRWECADMTMERDLVAVQIDDWIEERPFPEGHVLHIFGRGGEVQPQL 466
+ I R L L KR + V +D W + +P GH + G+ G+ +
Sbjct: 384 IRIQTRQLENLLDKR------------IIVSVDSWDRQSRYPSGHYVRTVGKIGDKDTET 431
Query: 467 DAILFQNAICLSEFSPEALSCLPCVPWELPPKE--IKSRKDLRNLCVFTIDPSTATDLDD 524
+ +L +N I FS + L+CLP +PW + ++ I R+DLR+L VF++DP D+DD
Sbjct: 432 EVVLIENDINSRPFSAQVLACLPPLPWSVSSEDLSIPFRQDLRHLRVFSVDPPGCKDIDD 491
Query: 525 ALSIEKLPSGNYRVGVHIADVSYFVLPHTALDREAQSRSTSVYMSQRKLPMLPALFSENI 584
AL LP+GN+ VGVHIADV+ FV P T LD EA R TSVY+ ++++ MLP +E++
Sbjct: 492 ALHCIALPNGNFDVGVHIADVTNFVFPGTPLDDEASQRGTSVYLVEKRIDMLPKPLTEDV 551
Query: 585 GSLNPGVDRLTVSILLDITDAGDVVDRWVGRAVIQSCCKLSYEHAQFIIDCQISDFYGED 644
SL V+RL S++ ++T D++ ++VI+S LSY AQ +D
Sbjct: 552 CSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSAAALSYVEAQARMD---------- 601
Query: 645 FPKVHGRFEWPDVISSLKSLYAISDVLKHKRFTDGALRLDNPKVAILFD-ENGIPCDITF 703
R P V + L+++ +++ ++ +R +GAL L + +V D E P DI
Sbjct: 602 ----DSRLMDP-VTTDLRNMNSLAKKMRLRRIENGALTLASAEVKFQIDTETHNPLDIGI 656
Query: 704 SERKESNLLVEEYMLLANRTAAEVICRAYPDIALLRRHPEPNMRKLRELMAFCEKHGLEL 763
+ KE+N +VEE+ML AN + A+ I +++P +LLRRHP P L L+ GL L
Sbjct: 657 YQIKEANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTKEMLEPLLRVSAAIGLNL 716
Query: 764 NTSSSGQFHRSLEKAKEKLKDDPVLYDILISYATKPMLLASYFCSGDLKDNEHEWGHYAL 823
+ SSS SL+ A + DDP ++ T+ M A YFCSGDL + E+ HY L
Sbjct: 717 DVSSSKALADSLDHA---VGDDPYFNKLIRILTTRCMSQAVYFCSGDL--SPPEYHHYGL 771
Query: 824 AVPLYTHFTSPLRRYPDIIVHRTLLAAIEVEEL 856
A PLYTHFTSP+RRY D+IVHR L A+I + +L
Sbjct: 772 ATPLYTHFTSPIRRYADVIVHRLLAASIGISKL 804
>Medtr4g021750.1 | ribonuclease II | HC | chr4:7207202-7191578 |
20130731
Length = 787
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 497 PKEIKSRKDLRNLCVFTIDPSTATDLDDALSIEKLPSGNYRVGVHIADVSYFVLPHTALD 556
P EI +RK+L NL V+ ID A +LDDALS KL G + +H+AD + +V P + +D
Sbjct: 377 PDEI-NRKNLTNLKVYAIDVDEADELDDALSATKLQDGRINIWIHVADATRYVQPGSIVD 435
Query: 557 REAQSRSTSVYMSQRKLPMLPALFSENIGSLNPG--VDRLTVSILLDITDAGDVVDRWVG 614
REA R TSV++ M P + SL G + +TVS++L D G + + V
Sbjct: 436 REAMRRGTSVFLPTATYSMFPENLAMGAMSLRQGEVCNAVTVSVVLH--DDGSIAECSVF 493
Query: 615 RAVIQSCCKLSYEHA 629
+VI+ L+YE A
Sbjct: 494 NSVIKPTYMLTYESA 508
>Medtr4g021750.3 | ribonuclease II | HC | chr4:7207197-7191693 |
20130731
Length = 614
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 497 PKEIKSRKDLRNLCVFTIDPSTATDLDDALSIEKLPSGNYRVGVHIADVSYFVLPHTALD 556
P EI +RK+L NL V+ ID A +LDDALS KL G + +H+AD + +V P + +D
Sbjct: 204 PDEI-NRKNLTNLKVYAIDVDEADELDDALSATKLQDGRINIWIHVADATRYVQPGSIVD 262
Query: 557 REAQSRSTSVYMSQRKLPMLPALFSENIGSLNPG--VDRLTVSILLDITDAGDVVDRWVG 614
REA R TSV++ M P + SL G + +TVS++L D G + + V
Sbjct: 263 REAMRRGTSVFLPTATYSMFPENLAMGAMSLRQGEVCNAVTVSVVLH--DDGSIAECSVF 320
Query: 615 RAVIQSCCKLSYEHA 629
+VI+ L+YE A
Sbjct: 321 NSVIKPTYMLTYESA 335
>Medtr4g021750.2 | ribonuclease II | HC | chr4:7203751-7191578 |
20130731
Length = 555
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 497 PKEIKSRKDLRNLCVFTIDPSTATDLDDALSIEKLPSGNYRVGVHIADVSYFVLPHTALD 556
P EI +RK+L NL V+ ID A +LDDALS KL G + +H+AD + +V P + +D
Sbjct: 145 PDEI-NRKNLTNLKVYAIDVDEADELDDALSATKLQDGRINIWIHVADATRYVQPGSIVD 203
Query: 557 REAQSRSTSVYMSQRKLPMLPALFSENIGSLNPG--VDRLTVSILLDITDAGDVVDRWVG 614
REA R TSV++ M P + SL G + +TVS++L D G + + V
Sbjct: 204 REAMRRGTSVFLPTATYSMFPENLAMGAMSLRQGEVCNAVTVSVVLH--DDGSIAECSVF 261
Query: 615 RAVIQSCCKLSYEHA 629
+VI+ L+YE A
Sbjct: 262 NSVIKPTYMLTYESA 276