Miyakogusa Predicted Gene

Lj0g3v0327639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327639.1 Non Characterized Hit- tr|K3X0Z8|K3X0Z8_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G01,29.63,1e-18,seg,NULL; "Winged helix" DNA-binding
domain,NULL; Rap30/74 interaction domains,Transcription Factor
,CUFF.22304.1
         (263 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g112490.1 | transcription initiation factor IIF beta subun...   313   1e-85
Medtr6g033365.1 | transcription initiation factor IIF beta subun...   299   1e-81

>Medtr3g112490.1 | transcription initiation factor IIF beta subunit
           | HC | chr3:52752265-52747840 | 20130731
          Length = 262

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 145/243 (59%), Positives = 195/243 (80%), Gaps = 4/243 (1%)

Query: 21  HVDTSKSDRAVWLMKCPPLVSRSLYAPPSDPSRPVAKVVVSIDPLXXXXXXXXPQFTMEL 80
           +++TSK++R+VWLMKCP  V++S    P  PS+P++KVV SIDPL         QFTME+
Sbjct: 15  NLETSKAERSVWLMKCPVAVAKSWQNHP--PSQPLSKVVFSIDPLLPEDDPAHLQFTMEM 72

Query: 81  AGTESGNIPKCYAMDMSKDFIPMSVFSDTQQG-KISVEGKILNKFDMRPHNQSLELYGKL 139
           +GTE+ N+PK Y+++M KDF+PM +FS+T +G K+++EGK+ +KFDM+P +++++ YGKL
Sbjct: 73  SGTEAVNMPKTYSLNMFKDFVPMCIFSETSEGDKVAMEGKVEHKFDMKPRHENMDDYGKL 132

Query: 140 CRERTNKYMVKNRQIQVIDNDTGAHMRPMPGMISFSVSGPTDKKKTQ-AKTTEMKRTRRD 198
           CRERT K M+KNRQ+Q+I +D G HMRPMPGM+    S   DKK+TQ  K T+ KRTRRD
Sbjct: 133 CRERTKKSMIKNRQVQIIADDRGTHMRPMPGMVGLVSSNFKDKKRTQPVKQTDTKRTRRD 192

Query: 199 RGEMEEIVFKLFERQPNWSLRNLIQETDQPEQFLKDILKDLCVYNNKGTNQGTYELKPEY 258
           RGE+E+I+FKLFERQPNW+L+ L+QETDQP QFLK+IL +LCVYN +G NQGTYELKPEY
Sbjct: 193 RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEY 252

Query: 259 RKS 261
           +KS
Sbjct: 253 KKS 255


>Medtr6g033365.1 | transcription initiation factor IIF beta subunit
           | HC | chr6:10727061-10724467 | 20130731
          Length = 189

 Score =  299 bits (766), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/190 (75%), Positives = 165/190 (86%), Gaps = 5/190 (2%)

Query: 78  MELAGTESGNIPKCYAMDMSKDFIPMSVFSDTQQGKISVEGKILNKFDMRPHNQSLELYG 137
           MEL G + G+ P+C+ MDMSK F+PMSVFSD+ QGK+SVEGKI+NKFDM+PH+Q+LE+YG
Sbjct: 1   MELGGNQVGDTPRCFDMDMSKAFVPMSVFSDSTQGKVSVEGKIVNKFDMKPHDQNLEVYG 60

Query: 138 KLCRERTNKYMVKNRQIQVIDNDTGAHMRPMPGMISFSV-SGPTD---KKKTQAKTTEMK 193
           KLCRERT KYMVKNRQIQVI ND GA MRPMPG I+FSV SGPT    KKK Q + T+ K
Sbjct: 61  KLCRERTKKYMVKNRQIQVIGNDNGARMRPMPG-ITFSVSSGPTKDNIKKKPQGRGTDTK 119

Query: 194 RTRRDRGEMEEIVFKLFERQPNWSLRNLIQETDQPEQFLKDILKDLCVYNNKGTNQGTYE 253
           RTR +RGE+EE +FK FE+Q NWSLRNL+QETDQPEQFLKDILKDLCVYNNKGTNQGTYE
Sbjct: 120 RTRGNRGEVEESLFKKFEKQSNWSLRNLVQETDQPEQFLKDILKDLCVYNNKGTNQGTYE 179

Query: 254 LKPEYRKSGD 263
           LKPEYRK+GD
Sbjct: 180 LKPEYRKTGD 189