Miyakogusa Predicted Gene

Lj0g3v0327219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327219.1 Non Characterized Hit- tr|G3MJK9|G3MJK9_9ACAR
Putative uncharacterized protein (Fragment)
OS=Amblyom,36.21,7e-18,REF,Rubber elongation factor,CUFF.22263.1
         (228 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g080570.1 | rubber elongation factor protein | HC | chr8:3...   303   1e-82
Medtr3g085370.1 | rubber elongation factor protein | HC | chr3:3...   281   4e-76
Medtr3g085395.1 | NLI interacting factor, putative | HC | chr3:3...   243   8e-65
Medtr1g055235.1 | rubber elongation factor protein | HC | chr1:2...   172   3e-43
Medtr2g013440.1 | rubber elongation factor protein | HC | chr2:3...   145   4e-35

>Medtr8g080570.1 | rubber elongation factor protein | HC |
           chr8:34649876-34652021 | 20130731
          Length = 231

 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 180/223 (80%)

Query: 6   IDKSKNKELKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNILGPVYN 65
           ++++ +++LKHLGFV+I A+  F+ +S+LY+Y K NSGPLRSA+GTVEGTVT +LGPVYN
Sbjct: 9   VERNDHEKLKHLGFVRIAAIHAFVCMSSLYDYAKQNSGPLRSAVGTVEGTVTTVLGPVYN 68

Query: 66  NFKGVPNDVLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGLIQKVTQEAKKVTSEARSA 125
            FK +P D+L+F DNKVDE ++KF+EHAP F +Q+AN AKGLIQ+ T +A+KV +EA+S 
Sbjct: 69  KFKPLPQDLLVFFDNKVDEATNKFEEHAPTFVKQVANQAKGLIQEATHKAEKVVNEAQSG 128

Query: 126 GPRAVVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVPTAAHWSEKYNHIIKVMA 185
           G +   +YVAT+SK +VL   VK+W GLNHYPPFH VAEMAVPTAAHWSEKYNH++K + 
Sbjct: 129 GAKTAANYVATKSKQIVLTSSVKIWLGLNHYPPFHAVAEMAVPTAAHWSEKYNHVVKDIT 188

Query: 186 EKGYSVAGYLPLIPIDAIAKAFKQGECNLKGNDVAASAKERSE 228
            KGY+V GYLPLIPID IAKAFKQGE N+  +   +S ++ S+
Sbjct: 189 GKGYTVFGYLPLIPIDEIAKAFKQGEVNVSVDHETSSGEDFSD 231


>Medtr3g085370.1 | rubber elongation factor protein | HC |
           chr3:38579052-38576699 | 20130731
          Length = 217

 Score =  281 bits (718), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 174/218 (79%), Gaps = 1/218 (0%)

Query: 1   MATNGIDKSKNKELKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNIL 60
           MATN ++ +KNKELK LGFVKI A+ T++FVS LYE  K NSGPLRSA+ TVEGTVT ++
Sbjct: 1   MATNEVE-NKNKELKRLGFVKIAAIHTYVFVSYLYESAKKNSGPLRSAVETVEGTVTTVV 59

Query: 61  GPVYNNFKGVPNDVLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGLIQKVTQEAKKVTS 120
           GPVYN FK VP+DVL+F+DNKVDE +DKF EHAP  A+QL +  K  IQKVT EA KV S
Sbjct: 60  GPVYNKFKDVPDDVLVFVDNKVDEATDKFSEHAPHIAKQLTDKTKYFIQKVTHEAGKVVS 119

Query: 121 EARSAGPRAVVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVPTAAHWSEKYNHI 180
             RS GPRA V YVA+E+KN++LI  VKLW+GLN +PPFH VAE+ +PTAAHWSEKYNH 
Sbjct: 120 VGRSEGPRAAVDYVASETKNLLLINSVKLWTGLNKFPPFHAVAEITIPTAAHWSEKYNHA 179

Query: 181 IKVMAEKGYSVAGYLPLIPIDAIAKAFKQGECNLKGND 218
           IK MA KGYS  GYLPLIPI+AI+KAFKQGE   K ++
Sbjct: 180 IKDMAGKGYSFVGYLPLIPINAISKAFKQGEVKDKKSE 217


>Medtr3g085395.1 | NLI interacting factor, putative | HC |
           chr3:38591644-38588291 | 20130731
          Length = 391

 Score =  243 bits (621), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 145/193 (75%), Gaps = 7/193 (3%)

Query: 1   MATNGIDKSKNKELKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNIL 60
           MAT  ++ + NKELKHLGF+KI A+ T++F+S LYE  K N+GPLRS + TVEG VT ++
Sbjct: 1   MATIEVEYT-NKELKHLGFLKIAAIHTYVFISYLYESAKKNAGPLRSVVETVEGAVTTVV 59

Query: 61  GPVYNNFKGVPNDVLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGLIQKVTQEAKKVTS 120
           GPVYN FK VP+DVL+F+DNKVDE +DKF EHA   A+QL +  K LIQKVT EA KV  
Sbjct: 60  GPVYNKFKDVPDDVLVFVDNKVDEATDKFSEHATHIAKQLTDKTKFLIQKVTHEAGKV-- 117

Query: 121 EARSAGPRAVVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVPTAAHWSEKYNHI 180
                 PRA V YVATE+KN++LI  VKLW+GLN +PPFH  AEM +PTAAHWS+KYNH 
Sbjct: 118 ----GRPRAAVDYVATETKNLLLINSVKLWTGLNKFPPFHAAAEMTIPTAAHWSKKYNHA 173

Query: 181 IKVMAEKGYSVAG 193
           IK MA KGYS  G
Sbjct: 174 IKDMAGKGYSFVG 186


>Medtr1g055235.1 | rubber elongation factor protein | HC |
           chr1:24406970-24407410 | 20130731
          Length = 146

 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 101/133 (75%)

Query: 96  FARQLANHAKGLIQKVTQEAKKVTSEARSAGPRAVVHYVATESKNVVLICLVKLWSGLNH 155
           F +   +   GLIQ+ T EA+KV +EA+S G +A V+YVAT+SK +VL  LVK+WSGLNH
Sbjct: 14  FRKHYQHWYHGLIQEATHEAEKVVNEAQSGGAKAAVNYVATKSKQIVLTSLVKIWSGLNH 73

Query: 156 YPPFHVVAEMAVPTAAHWSEKYNHIIKVMAEKGYSVAGYLPLIPIDAIAKAFKQGECNLK 215
           YPPFH VAEMAVPT A WSEKYNH++K +  KGY+V GYLPLIPID IAKAFKQGE N+ 
Sbjct: 74  YPPFHAVAEMAVPTTARWSEKYNHVVKDITRKGYTVFGYLPLIPIDEIAKAFKQGEVNVS 133

Query: 216 GNDVAASAKERSE 228
            +   +S ++ S+
Sbjct: 134 ADHETSSGEDFSD 146


>Medtr2g013440.1 | rubber elongation factor protein | HC |
           chr2:3618025-3619410 | 20130731
          Length = 213

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 110/198 (55%), Gaps = 7/198 (3%)

Query: 10  KNKELKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNILGPVYNNFKG 69
           + +ELK+L FV+   ++  +  + LY Y K  SGPL+S + TVE  V  ++GPVY+ F  
Sbjct: 21  EEQELKYLEFVQFATIQAVMRCAILYSYAKERSGPLKSGVDTVEEAVKTVVGPVYDKFHQ 80

Query: 70  VPNDVLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGLIQKVTQEAKKVTSEARSAGPRA 129
           VP ++L ++D KVDE   + D H P   ++++N A  ++ +V +     T    SA   A
Sbjct: 81  VPVELLKYVDRKVDESVSEIDRHVPTNVKKVSNQAASVVSEVRR-----TGVVESASGLA 135

Query: 130 VVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVPTAAHWSEKYNHIIKVMAEKGY 189
              Y   E K     C V  W  LN  P F  VA + +P AA+ SEKYN  +   AEKGY
Sbjct: 136 KTVYSKYEPK--AEQCAVSAWKRLNQLPLFPTVANVVLPKAAYCSEKYNEAVVSSAEKGY 193

Query: 190 SVAGYLPLIPIDAIAKAF 207
            V+ YLPL+P + IAK F
Sbjct: 194 RVSAYLPLVPTERIAKVF 211