Miyakogusa Predicted Gene

Lj0g3v0327169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327169.1 tr|A9U113|A9U113_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_173097,48.96,0.000000000000002,seg,NULL,CUFF.22257.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g087760.1 | hypothetical protein | HC | chr2:36931914-3693...   250   5e-67
Medtr8g006800.1 | hypothetical protein | HC | chr8:990089-991507...   245   1e-65

>Medtr2g087760.1 | hypothetical protein | HC |
           chr2:36931914-36934556 | 20130731
          Length = 184

 Score =  250 bits (639), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/187 (74%), Positives = 154/187 (82%), Gaps = 3/187 (1%)

Query: 1   MSFMKGDLLSRTRKLVKGLAKAEPVWLKAMEQAPPATFPRAGEKVQTITLPEDVYVKKFY 60
           MSFMKGDLLSR+RKLVKGLAKAEPVWLKAMEQAPPATFPR   K+QTIT PEDVYVK FY
Sbjct: 1   MSFMKGDLLSRSRKLVKGLAKAEPVWLKAMEQAPPATFPRPEGKLQTITFPEDVYVKSFY 60

Query: 61  KKYPESKYHDPIRFCAFDPPPSRIFALRVLELKKHGIGEEQAMAVADTEYRAEKKAKKQA 120
           KKYPESKYHDPI+F A DP PSR+FALRVLELK+HGI E +AM VAD EY AEKKAKK+A
Sbjct: 61  KKYPESKYHDPIKFSAIDPAPSRLFALRVLELKEHGISENEAMEVADMEYIAEKKAKKKA 120

Query: 121 YSRLKQIARLQGKRXXXXXXXXXIKEIQAEERKYVRDRFFNPKILEVVKQKKAEAESFSS 180
           Y+RLKQIARLQGK+         +KEIQAEERK+VRDRFFNP I E+VKQKK E+     
Sbjct: 121 YARLKQIARLQGKKLLPNPFPCPVKEIQAEERKFVRDRFFNPSIRELVKQKKEES---LQ 177

Query: 181 GFRGGDW 187
            F G +W
Sbjct: 178 RFGGNNW 184


>Medtr8g006800.1 | hypothetical protein | HC | chr8:990089-991507 |
           20130731
          Length = 220

 Score =  245 bits (626), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/187 (73%), Positives = 153/187 (81%), Gaps = 3/187 (1%)

Query: 1   MSFMKGDLLSRTRKLVKGLAKAEPVWLKAMEQAPPATFPRAGEKVQTITLPEDVYVKKFY 60
           MSFMKGDLLSR+RKLVKGLA AEPVWLKAMEQAPPATFPR   K+ TIT PEDVYVK+FY
Sbjct: 37  MSFMKGDLLSRSRKLVKGLAMAEPVWLKAMEQAPPATFPRPEGKLHTITFPEDVYVKRFY 96

Query: 61  KKYPESKYHDPIRFCAFDPPPSRIFALRVLELKKHGIGEEQAMAVADTEYRAEKKAKKQA 120
           KKYPESKYH PI+F A DP PSR+FALRVLELK+HGI E++AM VAD EY AEKKAKK+A
Sbjct: 97  KKYPESKYHHPIKFSAIDPAPSRLFALRVLELKEHGISEDEAMEVADMEYIAEKKAKKKA 156

Query: 121 YSRLKQIARLQGKRXXXXXXXXXIKEIQAEERKYVRDRFFNPKILEVVKQKKAEAESFSS 180
           Y+RLKQIARLQGK+         +KEIQAEERK+VRDRFFNP I E+VKQKK E+     
Sbjct: 157 YARLKQIARLQGKKLPPNPFPCPVKEIQAEERKFVRDRFFNPSIRELVKQKKEES---MQ 213

Query: 181 GFRGGDW 187
            F G +W
Sbjct: 214 RFGGDNW 220