Miyakogusa Predicted Gene

Lj0g3v0327109.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327109.2 Non Characterized Hit- tr|I3SCE2|I3SCE2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,35.88,3e-17,no
description,Nucleic acid-binding, OB-fold,CUFF.22661.2
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g062030.1 | replication factor-A carboxy-terminal domain p...    62   1e-10
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p...    57   5e-09
Medtr8g088810.1 | DUF223 domain protein | LC | chr8:36895897-368...    57   5e-09
Medtr8g062060.1 | DUF223 domain protein | LC | chr8:25911934-259...    55   1e-08
Medtr8g463820.1 | animal RPA1 domain protein | LC | chr8:2251463...    55   2e-08
Medtr6g039240.1 | animal RPA1 domain protein | LC | chr6:1418076...    55   2e-08
Medtr1g085690.1 | DUF223 domain protein | HC | chr1:38294818-382...    55   2e-08
Medtr4g071730.1 | hypothetical protein | LC | chr4:27152365-2715...    50   5e-07
Medtr1g094230.1 | animal RPA1 domain protein | LC | chr1:4243647...    49   1e-06
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p...    48   2e-06
Medtr7g032940.1 | hypothetical protein | LC | chr7:11624415-1162...    47   3e-06

>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr8:25901653-25904109 | 20130731
          Length = 575

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------ 54
           M+  ++ D  GKI C L G  V +   +++  +   PV+  QF KVK F+          
Sbjct: 163 MIIFEVTDHSGKIECALFGEYVALWNGFVSKGFEGLPVVVVQFAKVKIFRDKATLQNVKG 222

Query: 55  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLNTYPRKTLTQLL 114
           ++++  NP++ + I    RL  LG+    P   +    S  S+ +E L  YP+KT++QL 
Sbjct: 223 TTRLIVNPDVPEVIAFKDRLIGLGIQVP-PTLTVLGGPSKPSMEEEFLRMYPKKTISQLF 281

Query: 115 ETKEVIKFIL 124
            ++E   F++
Sbjct: 282 NSEEDGFFVV 291


>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr5:33436158-33438920 | 20130731
          Length = 517

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------ 54
           M+  ++ D+ GK  C L G  V+ +   +  +    P+I  QF KVK F+          
Sbjct: 163 MVIFEITDASGKCECALFGQYVDTLNKLMGKSGGGMPIILVQFAKVKIFRDKASLQNVMN 222

Query: 55  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPT--NESNLSLRDEMLNTYPRKTLTQ 112
           ++++  NP I  A ++ K +    ++    V  +P     S +SL ++ L T+P+KTL Q
Sbjct: 223 TTRILINPPIEQADQIRKSVTFGSMD----VSSVPRIGARSKVSLEEDFLRTFPKKTLEQ 278

Query: 113 LLETKEVIKFILF 125
           L  T E   F+++
Sbjct: 279 LHSTFEDGVFVVY 291


>Medtr8g088810.1 | DUF223 domain protein | LC |
           chr8:36895897-36893498 | 20130731
          Length = 306

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 4   IDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------SSK 57
           I+L  +  + +C L G  V  +   L+S+ ++  V+A    KVK F+G P       S++
Sbjct: 166 IELDSNGYRFKCTLFGEYVEELNSLLSSDESQNVVVAIMLTKVKLFQGKPALQNALSSTR 225

Query: 58  VHFNPNIHDAIELTKRLDV-----LGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPRKTL 110
           + FNP I +  EL KR ++     L  N + P  G I   N S + + +E L   PR T+
Sbjct: 226 ITFNPEIGETKELRKRREIDYLLFLSANTNSPASGLIQLPNSSRIPVNEEFLLLTPRTTI 285

Query: 111 TQLLETKEVIKFIL 124
            +L    +   FIL
Sbjct: 286 EELKNVNKGTSFIL 299


>Medtr8g062060.1 | DUF223 domain protein | LC |
           chr8:25911934-25914219 | 20130731
          Length = 530

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPVS----- 55
           +L  +L D R K  C L G  + I  + L     + P++  QF +V +  GTPV      
Sbjct: 163 VLKFELTDERTKFECALTGKYIGIFHELLKKVQLRLPIVVIQFARVIAENGTPVVCAEKD 222

Query: 56  -SKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLNTYPRKTLTQLL 114
            +KV FNP I +  +   RL + G      V F P    ++ +       YP+K++ +LL
Sbjct: 223 ITKVSFNPTIPEVTQFQDRLLIAGPK-SSIVKFNPNFRMSVDVSLSFSKMYPKKSIKELL 281

Query: 115 ETKE 118
              E
Sbjct: 282 VPPE 285


>Medtr8g463820.1 | animal RPA1 domain protein | LC |
           chr8:22514633-22516142 | 20130731
          Length = 283

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 7   QDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------SSKVHF 60
           +D   + +C L G  V  +  +L+S  ++  V+A    KVK F+G P       S+++ F
Sbjct: 156 RDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITF 215

Query: 61  NPNIHDAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPRKTLTQL 113
           NP I +  EL K    L  N + P  G I   N S +S+ +E L   PR T+ +L
Sbjct: 216 NPEIGETKELRKSF--LSANTNSPASGLIQLPNSSCISVHEEFLLLTPRTTIEEL 268


>Medtr6g039240.1 | animal RPA1 domain protein | LC |
           chr6:14180761-14182238 | 20130731
          Length = 289

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 7   QDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------SSKVHF 60
           +D   + +C L G  V  +  +L+S  ++  V+A    KVK F+G P       S+++ F
Sbjct: 156 RDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITF 215

Query: 61  NPNIHDAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPRKTLTQL 113
           NP I +  EL K    L  N + P  G I   N S +S+ +E L   PR T+ +L
Sbjct: 216 NPEIGETKELRKSF--LSANTNSPASGLIQLPNSSCISVHEEFLLLTPRTTIEEL 268


>Medtr1g085690.1 | DUF223 domain protein | HC |
           chr1:38294818-38296141 | 20130731
          Length = 233

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 10/122 (8%)

Query: 12  KIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------SSKVHFNPNIH 65
           + +C L G  V  +  +L+S  ++  V+A    KVK F+G P       S+++ FNP I 
Sbjct: 102 RFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITFNPEIG 161

Query: 66  DAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPRKTLTQLLETKEVIKFI 123
           +  EL K    L  N + P  G I   N S +S+ +E L   PR T+ +L    ++  F 
Sbjct: 162 ETKELRKSF--LSANTNSPASGLIQLPNSSCISVHEEFLLLTPRTTIEELKNVNKLFFFF 219

Query: 124 LF 125
            +
Sbjct: 220 FY 221


>Medtr4g071730.1 | hypothetical protein | LC |
           chr4:27152365-27153311 | 20130731
          Length = 154

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 7   QDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------SSKVHF 60
           +D   + +C L G  V  +  +L+S  ++  V+A    KVK F+G P       S+++ F
Sbjct: 38  RDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITF 97

Query: 61  NPNIHDAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPRKTLTQL 113
           NP I +  EL K    L  N + P  G I   N S + + +E L   P  T+ +L
Sbjct: 98  NPEIGETKELRKSF--LSANTNSPASGLIQLPNSSRIPVNEEFLLLTPWTTIEEL 150


>Medtr1g094230.1 | animal RPA1 domain protein | LC |
           chr1:42436471-42437983 | 20130731
          Length = 303

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 7   QDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------SSKVHF 60
           +D   + +C L G  V  +  +L+S  ++  V+A    KVK F+G P        +++ F
Sbjct: 156 RDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALRNAFSYTRITF 215

Query: 61  NPNIHDAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPRKTLTQL 113
           NP + +  E+ K    L  N + P  G I   N S + + +E L   PR T+ +L
Sbjct: 216 NPEMGETKEIRKSF--LSANTNSPASGLIQLPNSSRIPVNEEFLLLTPRTTIEEL 268


>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr1:33615520-33612872 | 20130731
          Length = 528

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGTPV------ 54
           M+  ++ D+ GK  C L G  V+ +   +  +    P+I  QF KVK F+          
Sbjct: 157 MVVFEITDASGKCECALFGQYVDTLNKLMGKSAGGMPIILVQFAKVKIFRDKASLQNVIN 216

Query: 55  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPT--NESNLSLRDEMLNTYPRKTLTQ 112
           ++ +  N  I    ++ K +     +    V  IP   + S +SL ++ L TYP+KTL Q
Sbjct: 217 TTWILINLPIEQDDQVRKSVTFGSTD----VSSIPRIGSRSKVSLEEDFLRTYPKKTLEQ 272

Query: 113 LLETKEVIKFILF 125
           L  T +   F+++
Sbjct: 273 LHSTFDDGVFVVY 285


>Medtr7g032940.1 | hypothetical protein | LC |
           chr7:11624415-11624827 | 20130731
          Length = 106

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 11/105 (10%)

Query: 12  KIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKG------TPVSSKVHFNPNIH 65
           K+ C+L    V+ +  YL S +TK  V+  QF+KVK F G          +K+ FNP + 
Sbjct: 2   KLECILFDPYVDDLDAYLQSGYTKNVVVLAQFLKVKMFNGKVQLQNAMNCTKLLFNPELP 61

Query: 66  DAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLNTYPRKTL 110
           + I+L+   D +G +   P+ F+  + S +SL  E LN   RKT+
Sbjct: 62  ETIKLS---DNIG-SPTQPLSFM-KDASVMSLTKEYLNLSHRKTI 101