Miyakogusa Predicted Gene

Lj0g3v0327109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327109.1 Non Characterized Hit- tr|I3SCE2|I3SCE2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,36.29,2e-18,no
description,Nucleic acid-binding, OB-fold; Nucleic acid-binding
proteins,Nucleic acid-binding, OB,CUFF.22661.1
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g062030.1 | replication factor-A carboxy-terminal domain p...    58   5e-09
Medtr8g463820.1 | animal RPA1 domain protein | LC | chr8:2251463...    53   9e-08
Medtr6g039240.1 | animal RPA1 domain protein | LC | chr6:1418076...    53   1e-07
Medtr8g088810.1 | DUF223 domain protein | LC | chr8:36895897-368...    53   1e-07
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p...    52   2e-07
Medtr7g032940.1 | hypothetical protein | LC | chr7:11624415-1162...    52   2e-07
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p...    52   3e-07
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p...    52   3e-07
Medtr1g085690.1 | DUF223 domain protein | HC | chr1:38294818-382...    52   3e-07
Medtr4g071730.1 | hypothetical protein | LC | chr4:27152365-2715...    50   8e-07
Medtr0042s0170.1 | replication factor-A carboxy-terminal domain ...    49   2e-06
Medtr2g048560.1 | replication factor-A carboxy-terminal domain p...    49   3e-06
Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 | 20...    48   3e-06

>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr8:25901653-25904109 | 20130731
          Length = 575

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPV 60
           M+  ++ D  GKI C L G  V +   +++  +   PV+  QF KVK F+ K  ++    
Sbjct: 163 MIIFEVTDHSGKIECALFGEYVALWNGFVSKGFEGLPVVVVQFAKVKIFRDKATLQNVKG 222

Query: 61  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLNTYPR 113
           ++++  NP++ + I    RL  LG+    P   +    S  S+ +E L  YP+
Sbjct: 223 TTRLIVNPDVPEVIAFKDRLIGLGIQVP-PTLTVLGGPSKPSMEEEFLRMYPK 274


>Medtr8g463820.1 | animal RPA1 domain protein | LC |
           chr8:22514633-22516142 | 20130731
          Length = 283

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 7   QDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSKVHF 66
           +D   + +C L G  V  +  +L+S  ++  V+A    KVK F+GK  ++    S+++ F
Sbjct: 156 RDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITF 215

Query: 67  NPNIHDAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPR 113
           NP I +  EL K    L  N + P  G I   N S +S+ +E L   PR
Sbjct: 216 NPEIGETKELRKSF--LSANTNSPASGLIQLPNSSCISVHEEFLLLTPR 262


>Medtr6g039240.1 | animal RPA1 domain protein | LC |
           chr6:14180761-14182238 | 20130731
          Length = 289

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 7   QDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSKVHF 66
           +D   + +C L G  V  +  +L+S  ++  V+A    KVK F+GK  ++    S+++ F
Sbjct: 156 RDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITF 215

Query: 67  NPNIHDAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPR 113
           NP I +  EL K    L  N + P  G I   N S +S+ +E L   PR
Sbjct: 216 NPEIGETKELRKSF--LSANTNSPASGLIQLPNSSCISVHEEFLLLTPR 262


>Medtr8g088810.1 | DUF223 domain protein | LC |
           chr8:36895897-36893498 | 20130731
          Length = 306

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 4   IDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSK 63
           I+L  +  + +C L G  V  +   L+S+ ++  V+A    KVK F+GK  ++    S++
Sbjct: 166 IELDSNGYRFKCTLFGEYVEELNSLLSSDESQNVVVAIMLTKVKLFQGKPALQNALSSTR 225

Query: 64  VHFNPNIHDAIELTKRLDV-----LGLNYHGPV-GFIP-TNESNLSLRDEMLNTYPR 113
           + FNP I +  EL KR ++     L  N + P  G I   N S + + +E L   PR
Sbjct: 226 ITFNPEIGETKELRKRREIDYLLFLSANTNSPASGLIQLPNSSRIPVNEEFLLLTPR 282


>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr5:33436158-33438920 | 20130731
          Length = 517

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPV 60
           M+  ++ D+ GK  C L G  V+ +   +  +    P+I  QF KVK F+ K  ++    
Sbjct: 163 MVIFEITDASGKCECALFGQYVDTLNKLMGKSGGGMPIILVQFAKVKIFRDKASLQNVMN 222

Query: 61  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPT--NESNLSLRDEMLNTYPR 113
           ++++  NP I  A ++ K +    ++    V  +P     S +SL ++ L T+P+
Sbjct: 223 TTRILINPPIEQADQIRKSVTFGSMD----VSSVPRIGARSKVSLEEDFLRTFPK 273


>Medtr7g032940.1 | hypothetical protein | LC |
           chr7:11624415-11624827 | 20130731
          Length = 106

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 12  KIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSKVHFNPNIH 71
           K+ C+L    V+ +  YL S +TK  V+  QF+KVK F GK  ++     +K+ FNP + 
Sbjct: 2   KLECILFDPYVDDLDAYLQSGYTKNVVVLAQFLKVKMFNGKVQLQNAMNCTKLLFNPELP 61

Query: 72  DAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLN 109
           + I+L+   D +G +   P+ F+  + S +SL  E LN
Sbjct: 62  ETIKLS---DNIG-SPTQPLSFM-KDASVMSLTKEYLN 94


>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr2:1569207-1566568 | 20130731
          Length = 555

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 4   IDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSK 63
           I+L+    KI+C L GS V+ +  ++AS      ++  Q  K KSF+ K  ++     +K
Sbjct: 168 IELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTK 227

Query: 64  VHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTN-ESNLSLRDEMLNTYPR 113
           V F P    A+ +  RL    ++   P+G      E+ L  R+E L   PR
Sbjct: 228 VIFKPTCDAAVSMRNRLSET-VDTPSPLGLTQLQPEAKLDPREEFLYGTPR 277


>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr8:33777150-33779789 | 20130731
          Length = 555

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 4   IDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSK 63
           I+L+    KI+C L GS V+ +  ++AS      ++  Q  K KSF+ K  ++     +K
Sbjct: 168 IELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTK 227

Query: 64  VHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTN-ESNLSLRDEMLNTYPR 113
           V F P    A+ +  RL    ++   P+G      E+ L  R+E L   PR
Sbjct: 228 VIFKPTCDAAVSMRNRLSET-VDTPSPLGLTQLQPEAKLDPREEFLYGTPR 277


>Medtr1g085690.1 | DUF223 domain protein | HC |
           chr1:38294818-38296141 | 20130731
          Length = 233

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 12  KIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSKVHFNPNIH 71
           + +C L G  V  +  +L+S  ++  V+A    KVK F+GK  ++    S+++ FNP I 
Sbjct: 102 RFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITFNPEIG 161

Query: 72  DAIELTKRLDVLGLNYHGPV-GFIPT-NESNLSLRDEMLNTYPR 113
           +  EL K    L  N + P  G I   N S +S+ +E L   PR
Sbjct: 162 ETKELRKSF--LSANTNSPASGLIQLPNSSCISVHEEFLLLTPR 203


>Medtr4g071730.1 | hypothetical protein | LC |
           chr4:27152365-27153311 | 20130731
          Length = 154

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 7   QDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSKVHF 66
           +D   + +C L G  V  +  +L+S  ++  V+A    KVK F+GK  ++    S+++ F
Sbjct: 38  RDGTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITF 97

Query: 67  NPNIHDAIELTKRLDVLGLNYHGPV-GFIP-TNESNLSLRDEML 108
           NP I +  EL K    L  N + P  G I   N S + + +E L
Sbjct: 98  NPEIGETKELRKSF--LSANTNSPASGLIQLPNSSRIPVNEEFL 139


>Medtr0042s0170.1 | replication factor-A carboxy-terminal domain
           protein | LC | scaffold0042:77181-79334 | 20130731
          Length = 400

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query: 9   SRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPVSSKVHFNP 68
           S GK+ C L GS V+++   +  +    PV+  QFVKVK F+ K  ++    ++++  NP
Sbjct: 71  SGGKVECALFGSNVDLLLKIMGKSANGMPVVVLQFVKVKIFRDKVSLQNVLNATRIIINP 130

Query: 69  NIHDAIELTK 78
           +I +A++  +
Sbjct: 131 DIDEAVKFKE 140


>Medtr2g048560.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr2:21416239-21412307 | 20130731
          Length = 549

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPV 60
           M+ I+L     + +  L G  V+ +  +LAS  T+  V+A    K+K F+G+  I+ T  
Sbjct: 163 MIPIELDYDGFRFKVTLFGPYVDELNAFLASGETENVVVAVLLTKIKIFQGQATIQNTIN 222

Query: 61  SSKVHFNPNIHDAIELTKRLDVLGLNYHGPVGFIPTNESNLSLRDEMLNTYP 112
           ++KV FNP    A+ L KR+ V   +   P     T  S +S+ ++ LN  P
Sbjct: 223 ATKVLFNPTFTAALLLKKRM-VENDDSPSPGISKITEASKVSVEEDFLNLSP 273


>Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 |
           20130731
          Length = 665

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 1   MLHIDLQDSRGKIRCLLIGSLVNIVADYLASNWTKRPVIAFQFVKVKSFKGKFLIEGTPV 60
           +L I+L D  GK  C L G+ V+ +   ++      PVI  QF KVK F+GK  I+    
Sbjct: 162 ILVIELTDHSGKCECTLFGNYVDELHKLMSKAVEGSPVIVIQFAKVKIFRGKASIQNVVG 221

Query: 61  S-SKVHFNPNIHDAIELTKRLDV 82
           S ++++ NP+  +A++  +  +V
Sbjct: 222 STTRIYLNPSFPEALKFKEGKEV 244