Miyakogusa Predicted Gene

Lj0g3v0326949.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326949.1 tr|G7LDQ8|G7LDQ8_MEDTR Translation initiation
factor OS=Medicago truncatula GN=MTR_8g061130 PE=3
SV=,67.97,2.94273e-44,Ribosomal protein S1-like RNA-binding
domain,RNA-binding domain, S1; Nucleic acid-binding
proteins,N,CUFF.22240.1
         (141 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g061130.1 | translation initiation factor IF-1 | HC | chr8...   160   4e-40
Medtr0002s0770.1 | translation initiation factor IF-1 | HC | sca...   107   3e-24

>Medtr8g061130.1 | translation initiation factor IF-1 | HC |
           chr8:21190038-21189155 | 20130731
          Length = 147

 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/82 (90%), Positives = 79/82 (96%)

Query: 60  TADKSSEQKWVHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRKNFVRILPGDRVKVEV 119
           T DK+SEQKWVHEGLITESLPNGMFRVRLDNEDLILGY+SG+IRKN+VRILPGDRV+VEV
Sbjct: 65  TPDKASEQKWVHEGLITESLPNGMFRVRLDNEDLILGYISGRIRKNYVRILPGDRVRVEV 124

Query: 120 SRYDSSKGRIVYRLRNTGGGSS 141
           SRYDSSKGRIVYRLRNT GG S
Sbjct: 125 SRYDSSKGRIVYRLRNTPGGGS 146


>Medtr0002s0770.1 | translation initiation factor IF-1 | HC |
           scaffold0002:276780-276439 | 20130731
          Length = 113

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 60/68 (88%)

Query: 66  EQKWVHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRKNFVRILPGDRVKVEVSRYDSS 125
           E K   EGL+TE+LPNGMFRVRL+N+ +ILGY+SGKIR + +RIL GDRVK+EVSRYDSS
Sbjct: 15  EAKVTFEGLVTEALPNGMFRVRLENDTIILGYISGKIRSSSIRILMGDRVKIEVSRYDSS 74

Query: 126 KGRIVYRL 133
           KGRI+YRL
Sbjct: 75  KGRIIYRL 82