Miyakogusa Predicted Gene

Lj0g3v0326839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326839.1 NODE_63401_length_1142_cov_56.246937.path2.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079120.1 | VQ motif protein | HC | chr2:33155261-33154057...   143   7e-35
Medtr2g013950.1 | VQ motif protein | HC | chr2:3839731-3840815 |...    93   1e-19
Medtr4g088695.1 | VQ motif protein | HC | chr4:35303299-35302060...    74   9e-14

>Medtr2g079120.1 | VQ motif protein | HC | chr2:33155261-33154057 |
           20130731
          Length = 246

 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 100/146 (68%), Gaps = 10/146 (6%)

Query: 20  QDPVPSSRNFNIPPMKTAPKKQQQQGFKLYERRNYNNSLKNT-LIINTFMKPNSAEICRF 78
           QD    +RNFNIPP+KTAPKKQ   GFKLYERRN   SLKN+ L++NT M PN ++   F
Sbjct: 106 QDLPQQTRNFNIPPIKTAPKKQ---GFKLYERRN---SLKNSVLMLNTLM-PNFSQNSNF 158

Query: 79  X--XXXXXXXXXXXXDFPSLALSPVTPLNDDPFDKXXXXXXXXXXXXKAIADKGFYLHPS 136
                          DFPSLALSPVTPLNDDPFDK            KAIA++G+YLHPS
Sbjct: 159 SPRKQQQEILSPSLLDFPSLALSPVTPLNDDPFDKSSPSLGNSSEEDKAIAERGYYLHPS 218

Query: 137 PMSTPRGFEPQLLPLFPVTSPRVTES 162
           P++TPR  EPQLLPLFP++SPRV++S
Sbjct: 219 PITTPRDAEPQLLPLFPLSSPRVSQS 244


>Medtr2g013950.1 | VQ motif protein | HC | chr2:3839731-3840815 |
           20130731
          Length = 264

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 83/171 (48%), Gaps = 29/171 (16%)

Query: 1   MLTGSSDTTKPAPCSKLHLQDPVPSSRNFNIPPMKTAPKKQQQQGFKLYERRNYNNSLKN 60
           MLTGSS+T K A  S         ++ N NIPP K       QQGFKLYERRN   S   
Sbjct: 99  MLTGSSETAKQASTS-------TKANHNHNIPPKK-------QQGFKLYERRN---SFHK 141

Query: 61  TLIINTFMKPNSAEICRFXXXXXXXXXXXXXDFPSLALSPVTPLNDDPFDKXXXXXXX-- 118
            L IN  + P  +                  DFPSL LSPVTPL  DPF++         
Sbjct: 142 NLNINPLLPPIFSNSTFSPRNKQEILSPSILDFPSLVLSPVTPLIPDPFNRSGSSSSSSA 201

Query: 119 --------XXXXXKAIADKGFYLHPSP--MSTPRGFEPQLLPLFPVTSPRV 159
                        KAI +KGF+LHPSP   ST R  EP+LLPLFP +SPR 
Sbjct: 202 ARNGSSLDSLAEDKAIREKGFFLHPSPRAASTSRDSEPRLLPLFPTSSPRA 252


>Medtr4g088695.1 | VQ motif protein | HC | chr4:35303299-35302060 |
           20130731
          Length = 244

 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 70/138 (50%), Gaps = 19/138 (13%)

Query: 42  QQQGFKLYERRNYNNSLKNTLIINTFM---KPNSAEICRFXXXXXXXXXXXXXDFPSLAL 98
           ++ GFKLYERRN   SLKN L +N  +     NS     F             DFP+L L
Sbjct: 105 KKSGFKLYERRN---SLKN-LHLNPLLPVFSSNSNNPSSFSPRKPEILSPSILDFPALVL 160

Query: 99  SPVTPLNDDPFDKXXXXXXX-----------XXXXXKAIADKGFYLHPSPMSTPRGFE-P 146
           SPVTPL  DPF++                       KAI +K F+LHPSP +TPR  E P
Sbjct: 161 SPVTPLIPDPFNRTTVSGHRCGNGSPKPVLNIEAEEKAIKEKKFFLHPSPSTTPRDSEQP 220

Query: 147 QLLPLFPVTSPRVTESPS 164
           +LLPLFP TSPR    PS
Sbjct: 221 RLLPLFPTTSPRARLGPS 238