Miyakogusa Predicted Gene

Lj0g3v0326609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326609.1 tr|Q8W105|Q8W105_ARATH At1g50840/F8A12_8
OS=Arabidopsis thaliana GN=At1g50840 PE=2 SV=1,81.48,2e-19,no
description,NULL; DNA/RNA polymerases,NULL; DNA POLYMERASE
I,NULL,CUFF.22220.1
         (57 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g092100.1 | PolI-like B DNA polymerase | HC | chr5:4022121...   110   2e-25
Medtr3g050110.1 | PolI-like B DNA polymerase | HC | chr3:1973201...    98   2e-21
Medtr3g050110.3 | PolI-like B DNA polymerase | HC | chr3:1972956...    98   2e-21
Medtr3g050110.2 | PolI-like B DNA polymerase | HC | chr3:1972956...    98   2e-21
Medtr3g050140.1 | PolI-like B DNA polymerase | HC | chr3:1974754...    97   3e-21
Medtr3g050140.10 | PolI-like B DNA polymerase | HC | chr3:197535...    97   5e-21
Medtr3g050140.3 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   5e-21
Medtr3g050140.8 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   5e-21
Medtr3g050140.5 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   5e-21
Medtr3g050140.2 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   5e-21
Medtr3g050140.4 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   5e-21
Medtr3g050140.9 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   5e-21
Medtr3g050140.6 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   6e-21
Medtr3g050140.7 | PolI-like B DNA polymerase | HC | chr3:1974564...    96   7e-21

>Medtr5g092100.1 | PolI-like B DNA polymerase | HC |
            chr5:40221218-40213069 | 20130731
          Length = 1084

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 52/54 (96%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNIL VDLSVDAKCAQNWYS K
Sbjct: 1031 QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILKVDLSVDAKCAQNWYSAK 1084


>Medtr3g050110.1 | PolI-like B DNA polymerase | HC |
            chr3:19732012-19740084 | 20130731
          Length = 1055

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPTESAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 1002 QVHDEVILEGPTESAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1055


>Medtr3g050110.3 | PolI-like B DNA polymerase | HC |
           chr3:19729565-19740524 | 20130731
          Length = 922

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 50/54 (92%)

Query: 4   QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
           QVHDEVILEGPTESAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 869 QVHDEVILEGPTESAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 922


>Medtr3g050110.2 | PolI-like B DNA polymerase | HC |
           chr3:19729560-19740468 | 20130731
          Length = 922

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 50/54 (92%)

Query: 4   QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
           QVHDEVILEGPTESAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 869 QVHDEVILEGPTESAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 922


>Medtr3g050140.1 | PolI-like B DNA polymerase | HC |
            chr3:19747543-19761369 | 20130731
          Length = 1158

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 1105 QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1158


>Medtr3g050140.10 | PolI-like B DNA polymerase | HC |
           chr3:19753549-19761421 | 20130731
          Length = 654

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4   QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
           QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 601 QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 654


>Medtr3g050140.3 | PolI-like B DNA polymerase | HC |
            chr3:19745644-19761421 | 20130731
          Length = 1087

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 1034 QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1087


>Medtr3g050140.8 | PolI-like B DNA polymerase | HC |
            chr3:19745644-19761421 | 20130731
          Length = 1007

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 954  QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1007


>Medtr3g050140.5 | PolI-like B DNA polymerase | HC |
            chr3:19745644-19761421 | 20130731
          Length = 1040

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 987  QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1040


>Medtr3g050140.2 | PolI-like B DNA polymerase | HC |
            chr3:19745643-19761421 | 20130731
          Length = 1040

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 987  QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1040


>Medtr3g050140.4 | PolI-like B DNA polymerase | HC |
            chr3:19745644-19761421 | 20130731
          Length = 1040

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 987  QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1040


>Medtr3g050140.9 | PolI-like B DNA polymerase | HC |
            chr3:19745644-19761421 | 20130731
          Length = 1040

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 987  QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1040


>Medtr3g050140.6 | PolI-like B DNA polymerase | HC |
            chr3:19745648-19761392 | 20130731
          Length = 1077

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 1024 QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 1077


>Medtr3g050140.7 | PolI-like B DNA polymerase | HC |
           chr3:19745643-19761421 | 20130731
          Length = 922

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 4   QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
           QVHDEVILEGPT+SAEVAK+IV++CMSKPF G+NIL V L+VDAKCAQNWY+ K
Sbjct: 869 QVHDEVILEGPTKSAEVAKNIVIDCMSKPFNGQNILKVGLTVDAKCAQNWYAAK 922