Miyakogusa Predicted Gene

Lj0g3v0326569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326569.1 Non Characterized Hit- tr|G7K8U1|G7K8U1_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,68.49,3e-16,coiled-coil,NULL,CUFF.22222.1
         (93 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g059050.1 | transmembrane protein, putative | HC | chr5:24...   167   2e-42
Medtr5g058700.1 | transmembrane protein, putative | HC | chr5:24...   119   5e-28

>Medtr5g059050.1 | transmembrane protein, putative | HC |
          chr5:24365493-24366999 | 20130731
          Length = 93

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 83/87 (95%)

Query: 2  GGEEKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISQ 61
          GGEEKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGI+ 
Sbjct: 3  GGEEKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGITA 62

Query: 62 CEREHAERQMALLEAQNSATETSLAET 88
          CEREHAERQM LLEAQN+A ETSL ET
Sbjct: 63 CEREHAERQMQLLEAQNAAAETSLEET 89


>Medtr5g058700.1 | transmembrane protein, putative | HC |
          chr5:24307771-24306574 | 20130731
          Length = 76

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 65/87 (74%), Gaps = 17/87 (19%)

Query: 2  GGEEKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISQ 61
          GGEEKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLV F               
Sbjct: 3  GGEEKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVIF--------------- 47

Query: 62 CEREHAERQMALLEAQNSATETSLAET 88
             EHAERQM LLEAQN+A ETSL ET
Sbjct: 48 --WEHAERQMQLLEAQNAAAETSLEET 72