Miyakogusa Predicted Gene

Lj0g3v0326359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326359.1 tr|F2CVG6|F2CVG6_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,53.64,5e-19,POLY(A)
POLYMERASE-RELATED,NULL; POLY(A) POLYMERASE,NULL; no description,NULL;
Nucleotidyltransferas,CUFF.22190.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g110375.7 | poly(A) polymerase-like protein | HC | chr3:51...    94   2e-20
Medtr3g110375.3 | poly(A) polymerase-like protein | HC | chr3:51...    94   2e-20
Medtr3g110375.4 | poly(A) polymerase-like protein | HC | chr3:51...    94   2e-20
Medtr3g110375.1 | poly(A) polymerase-like protein | HC | chr3:51...    94   3e-20
Medtr3g110375.9 | poly(A) polymerase-like protein | HC | chr3:51...    94   3e-20
Medtr3g110375.5 | poly(A) polymerase-like protein | HC | chr3:51...    94   3e-20
Medtr3g110375.6 | poly(A) polymerase-like protein | HC | chr3:51...    94   3e-20
Medtr3g110375.2 | poly(A) polymerase-like protein | HC | chr3:51...    94   3e-20
Medtr3g110375.8 | poly(A) polymerase-like protein | HC | chr3:51...    94   3e-20
Medtr0283s0030.1 | poly(A) polymerase | HC | scaffold0283:12811-...    89   1e-18
Medtr8g106560.2 | poly(A) polymerase-like protein | HC | chr8:44...    87   3e-18
Medtr8g106560.1 | poly(A) polymerase-like protein | HC | chr8:44...    87   3e-18
Medtr8g106560.3 | poly(A) polymerase-like protein | HC | chr8:44...    87   3e-18
Medtr6g082000.1 | poly(A) polymerase-like protein | HC | chr6:30...    81   2e-16
Medtr8g014560.5 | poly(A) polymerase | HC | chr8:4593559-4588712...    65   1e-11
Medtr8g014560.6 | poly(A) polymerase | HC | chr8:4593559-4588712...    65   1e-11
Medtr8g014560.3 | poly(A) polymerase | HC | chr8:4593559-4588008...    65   1e-11
Medtr8g014560.1 | poly(A) polymerase | HC | chr8:4593559-4588712...    65   1e-11
Medtr8g014560.2 | poly(A) polymerase | HC | chr8:4593559-4588003...    65   1e-11
Medtr8g014560.7 | poly(A) polymerase | HC | chr8:4592600-4588712...    65   1e-11
Medtr8g014560.4 | poly(A) polymerase | HC | chr8:4593559-4588712...    65   2e-11

>Medtr3g110375.7 | poly(A) polymerase-like protein | HC |
           chr3:51561683-51555466 | 20130731
          Length = 722

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.3 | poly(A) polymerase-like protein | HC |
           chr3:51561695-51555466 | 20130731
          Length = 719

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.4 | poly(A) polymerase-like protein | HC |
           chr3:51561695-51555466 | 20130731
          Length = 719

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.1 | poly(A) polymerase-like protein | HC |
           chr3:51561537-51555466 | 20130731
          Length = 701

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.9 | poly(A) polymerase-like protein | HC |
           chr3:51561676-51555466 | 20130731
          Length = 671

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.5 | poly(A) polymerase-like protein | HC |
           chr3:51561695-51555466 | 20130731
          Length = 671

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.6 | poly(A) polymerase-like protein | HC |
           chr3:51561695-51555466 | 20130731
          Length = 671

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.2 | poly(A) polymerase-like protein | HC |
           chr3:51561695-51555466 | 20130731
          Length = 671

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr3g110375.8 | poly(A) polymerase-like protein | HC |
           chr3:51561676-51555466 | 20130731
          Length = 671

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL    EE   R+  +++L QIV SW+K++  Q       +   +A I T+GSY L
Sbjct: 50  LVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 109

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH    DID LC+ P Y +  +DFF++LH++L    EV+E+  V  A VP
Sbjct: 110 GVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVP 160


>Medtr0283s0030.1 | poly(A) polymerase | HC |
           scaffold0283:12811-10616 | 20130731
          Length = 357

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL  + +E   R+  + +L QIV  W+K +       +  +   +A I T+GSY L
Sbjct: 43  LQDAGLYENQDEAICREEVLGRLDQIVKIWVKTICRAKGFNEQLVKEANAMIFTFGSYRL 102

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P +A+  EDFF  LH ML   PEV+E+  V  A VP
Sbjct: 103 GVHGPGADIDVLCVGPRHATRKEDFFGELHKMLSEMPEVTELHPVPDAHVP 153


>Medtr8g106560.2 | poly(A) polymerase-like protein | HC |
           chr8:44967321-44960896 | 20130731
          Length = 754

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL  + +E   R+  + +L QIV  W+K +       +  +   +A I T+GSY L
Sbjct: 43  LQDAGLYENQDEAICREEVLGRLDQIVKIWVKTICRAKGFNEQLVKEANAMIFTFGSYRL 102

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P +A+  EDFF  LH ML   PEV+E+  V  A VP
Sbjct: 103 GVHGPGADIDVLCVGPRHATRKEDFFGELHKMLSEMPEVTELHPVPDAHVP 153


>Medtr8g106560.1 | poly(A) polymerase-like protein | HC |
           chr8:44967313-44960863 | 20130731
          Length = 754

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL  + +E   R+  + +L QIV  W+K +       +  +   +A I T+GSY L
Sbjct: 43  LQDAGLYENQDEAICREEVLGRLDQIVKIWVKTICRAKGFNEQLVKEANAMIFTFGSYRL 102

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P +A+  EDFF  LH ML   PEV+E+  V  A VP
Sbjct: 103 GVHGPGADIDVLCVGPRHATRKEDFFGELHKMLSEMPEVTELHPVPDAHVP 153


>Medtr8g106560.3 | poly(A) polymerase-like protein | HC |
           chr8:44967321-44960896 | 20130731
          Length = 754

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL  + +E   R+  + +L QIV  W+K +       +  +   +A I T+GSY L
Sbjct: 43  LQDAGLYENQDEAICREEVLGRLDQIVKIWVKTICRAKGFNEQLVKEANAMIFTFGSYRL 102

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P +A+  EDFF  LH ML   PEV+E+  V  A VP
Sbjct: 103 GVHGPGADIDVLCVGPRHATRKEDFFGELHKMLSEMPEVTELHPVPDAHVP 153


>Medtr6g082000.1 | poly(A) polymerase-like protein | HC |
           chr6:30599628-30606293 | 20130731
          Length = 752

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 59/107 (55%)

Query: 5   GLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGLGVHS 64
           GL  S +E   R+  + +L QIV  W+K ++      +  +   +A I T+GSY LGVH 
Sbjct: 46  GLYESQQEAVGREEVLGRLDQIVKIWVKTISRAKGFNEQLVQEANAKIFTFGSYRLGVHG 105

Query: 65  SESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
             +DID LCV P +A+  EDFF  L  ML    EV+E+  V  A VP
Sbjct: 106 PGADIDTLCVGPRHATRDEDFFGELQKMLSEMEEVTELHPVPDAHVP 152


>Medtr8g014560.5 | poly(A) polymerase | HC | chr8:4593559-4588712 |
           20130731
          Length = 638

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 49  SATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSA 108
           +A ILT+GSY LGVH   +D+D LC+ P Y +  EDFF   H +L    EV+E+  V  A
Sbjct: 6   NAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDA 65

Query: 109 KVP 111
            VP
Sbjct: 66  HVP 68


>Medtr8g014560.6 | poly(A) polymerase | HC | chr8:4593559-4588712 |
           20130731
          Length = 638

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 49  SATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSA 108
           +A ILT+GSY LGVH   +D+D LC+ P Y +  EDFF   H +L    EV+E+  V  A
Sbjct: 6   NAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDA 65

Query: 109 KVP 111
            VP
Sbjct: 66  HVP 68


>Medtr8g014560.3 | poly(A) polymerase | HC | chr8:4593559-4588008 |
           20130731
          Length = 638

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 49  SATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSA 108
           +A ILT+GSY LGVH   +D+D LC+ P Y +  EDFF   H +L    EV+E+  V  A
Sbjct: 6   NAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDA 65

Query: 109 KVP 111
            VP
Sbjct: 66  HVP 68


>Medtr8g014560.1 | poly(A) polymerase | HC | chr8:4593559-4588712 |
           20130731
          Length = 633

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 49  SATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSA 108
           +A ILT+GSY LGVH   +D+D LC+ P Y +  EDFF   H +L    EV+E+  V  A
Sbjct: 6   NAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDA 65

Query: 109 KVP 111
            VP
Sbjct: 66  HVP 68


>Medtr8g014560.2 | poly(A) polymerase | HC | chr8:4593559-4588003 |
           20130731
          Length = 633

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 49  SATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSA 108
           +A ILT+GSY LGVH   +D+D LC+ P Y +  EDFF   H +L    EV+E+  V  A
Sbjct: 6   NAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDA 65

Query: 109 KVP 111
            VP
Sbjct: 66  HVP 68


>Medtr8g014560.7 | poly(A) polymerase | HC | chr8:4592600-4588712 |
           20130731
          Length = 633

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 49  SATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSA 108
           +A ILT+GSY LGVH   +D+D LC+ P Y +  EDFF   H +L    EV+E+  V  A
Sbjct: 6   NAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDA 65

Query: 109 KVP 111
            VP
Sbjct: 66  HVP 68


>Medtr8g014560.4 | poly(A) polymerase | HC | chr8:4593559-4588712 |
           20130731
          Length = 625

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 49  SATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSA 108
           +A ILT+GSY LGVH   +D+D LC+ P Y +  EDFF   H +L    EV+E+  V  A
Sbjct: 6   NAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTFHDILASMDEVTELQPVPDA 65

Query: 109 KVP 111
            VP
Sbjct: 66  HVP 68