Miyakogusa Predicted Gene

Lj0g3v0326259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326259.1 Non Characterized Hit- tr|F1QU12|F1QU12_DANRE
Uncharacterized protein (Fragment) OS=Danio rerio
PE=4,30,2e-18,ZINC_FINGER_C2H2_1,Zinc finger, C2H2; zf-C2H2,Zinc
finger, C2H2; zf-C2H2_4,NULL; seg,NULL; zinc fing,CUFF.22180.1
         (359 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g039590.1 | hypothetical protein | LC | chr8:14719961-1471...    75   1e-13
Medtr1g094740.1 | lysine-specific demethylase ELF6-like protein,...    59   6e-09
Medtr3g075210.1 | lysine-specific demethylase REF6-like protein,...    51   2e-06

>Medtr8g039590.1 | hypothetical protein | LC |
           chr8:14719961-14717313 | 20130731
          Length = 103

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/40 (80%), Positives = 34/40 (85%)

Query: 311 GDFEEADEQFRSRPRGGRKRVCPTVEMLIRKRVTPPSQLE 350
           GDFEE DEQFRS  RGGRKR CPTVEML+RKRV P +QLE
Sbjct: 26  GDFEETDEQFRSMNRGGRKRKCPTVEMLVRKRVAPSTQLE 65


>Medtr1g094740.1 | lysine-specific demethylase ELF6-like protein,
            putative | HC | chr1:42588916-42579741 | 20130731
          Length = 1481

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 65   EQCGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQG-KTFKCPI 123
            E CG  F  H Y L H R H  +RP+ CT   C  S++     T HL  H G K ++C +
Sbjct: 1394 EGCGKKFSSHKYALIHQRVHEDDRPFKCTWKGCSMSFKWSWARTEHLRVHTGEKPYQCKV 1453

Query: 124  ENCNSSFSIQSNLKRH 139
            E C  SF   S+  RH
Sbjct: 1454 EGCGLSFRFISDFSRH 1469


>Medtr3g075210.1 | lysine-specific demethylase REF6-like protein,
            putative | HC | chr3:34224724-34214998 | 20130731
          Length = 1572

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 67   CGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQG-KTFKCPIEN 125
            CG  F  H YL+QH R H  +RP  C    CK S++     T H+  H G + + C    
Sbjct: 1486 CGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYACAEPG 1545

Query: 126  CNSSFSIQSNLKRH 139
            C  +F   S+  RH
Sbjct: 1546 CGQTFRFVSDFSRH 1559