Miyakogusa Predicted Gene

Lj0g3v0326149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326149.1 tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen
decarboxylase OS=Lotus japonicus PE=2 SV=1,99.44,0,UROPORPHYRINOGEN
DECARBOXYLASE,Uroporphyrinogen decarboxylase HemE;
METHYLTETRAHYDROFOLATE:HOMOCYSTE,CUFF.22185.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g072330.1 | uroporphyrinogen decarboxylase | HC | chr3:324...   284   3e-77
Medtr2g076340.1 | uroporphyrinogen decarboxylase | HC | chr2:319...   152   1e-37

>Medtr3g072330.1 | uroporphyrinogen decarboxylase | HC |
           chr3:32489055-32484665 | 20130731
          Length = 389

 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 152/180 (84%), Gaps = 5/180 (2%)

Query: 1   MLC--VNPSFTSLLPSPLGKPRLIFPSNSRNPISCTLPGTVAEPKLTAAAEPLLLNAVRG 58
           M C  V+ SFTS+LP    K     P +    I C+LPG VAEPK   A EPLLLNAVRG
Sbjct: 1   MFCGVVSTSFTSILPR---KQHHSTPFSPFKSIQCSLPGAVAEPKTNNATEPLLLNAVRG 57

Query: 59  LDVERPPVWLMRQAGRYMKSYQTICEKHPSFRERSENVDLVVEISLQPWKVFKPDGVILF 118
           LDVERPPVWLMRQAGRYMKSYQ ICEK+PSFRERSENVDLVVEISLQPWKVF+PDGVILF
Sbjct: 58  LDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWKVFQPDGVILF 117

Query: 119 SDILTPLSGMNIPFDIVKGKGPVIFDPIHSAAQVDQVTEFIPQGSVPYVGEALTILRKEI 178
           SDILTPLSGMNIPFDIVKGKGPVIFDP+HSA QVDQV EFIP+ SVPYVGEAL+ILRKE+
Sbjct: 118 SDILTPLSGMNIPFDIVKGKGPVIFDPVHSAGQVDQVREFIPEESVPYVGEALSILRKEV 177


>Medtr2g076340.1 | uroporphyrinogen decarboxylase | HC |
           chr2:31981646-31987745 | 20130731
          Length = 407

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 113/169 (66%), Gaps = 12/169 (7%)

Query: 10  SLLPSPLGKPRLIFPSNSRNPISCTLPGTVAEPKLTAAAEPLLLNAVRGLDVERPPVWLM 69
           +LL SP  KP+   PS ++  ++C+          +++++PLL+ A RG  V RPP W+M
Sbjct: 27  NLLSSPF-KPK---PSLTKFTLTCSA-------ASSSSSDPLLVKAARGDPVSRPPAWMM 75

Query: 70  RQAGRYMKSYQTICEKHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLSGMN 129
           RQAGRYM  Y+ + EKHPSFRERSE  DL+VEISLQPWK F+PDGVI+FSDILTPL    
Sbjct: 76  RQAGRYMAIYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFG 135

Query: 130 IPFDIVKGKGPVIFDPIHSAAQVDQVTEFIPQGSVPYVGEALTILRKEI 178
           I FDI   +GPVI  PI S   + +V   I    + +VGE+L IL++E+
Sbjct: 136 IDFDIEDVRGPVIQSPIRSEEGL-KVLHPIDFDKLRFVGESLKILQQEV 183