Miyakogusa Predicted Gene

Lj0g3v0325919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0325919.1 tr|C8RZD4|C8RZD4_9RHOB Translation initiation
factor IF-3 OS=Rhodobacter sp. SW2 GN=infC PE=3
SV=1,33.97,5e-18,IF3_N,Translation initiation factor 3, N-terminal;
IF3_C,Translation initiation factor 3, C-terminal,CUFF.22148.1
         (384 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g112820.1 | translation initiation factor IF-3 | HC | chr1...   427   e-120
Medtr1g112830.1 | DHHC-type zinc finger protein | HC | chr1:5111...    80   2e-15
Medtr4g130530.1 | translation initiation factor IF-3 | HC | chr4...    57   2e-08
Medtr4g130530.2 | translation initiation factor IF-3 | HC | chr4...    57   2e-08
Medtr4g130530.3 | translation initiation factor IF-3 | HC | chr4...    53   5e-07

>Medtr1g112820.1 | translation initiation factor IF-3 | HC |
           chr1:51109122-51095940 | 20130731
          Length = 949

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/406 (56%), Positives = 277/406 (68%), Gaps = 50/406 (12%)

Query: 6   QIGKRKLKTVCIQLRRCYIRLPHDSSLNSTPKPYPSEIPRPCSVFHGRPSSVYNSVRFFA 65
           +IG  KLK  C Q RRCY  L H S  NSTPK  P+ +P P S+FH RP+   NSVRF+A
Sbjct: 479 EIGNSKLKAACFQFRRCYTHLSHASLSNSTPKTCPTVMPNPHSLFHDRPTIFLNSVRFYA 538

Query: 66  APIQFQPKPKKEEDN--GPRLNDEIRAQFIRLVSDDGHTVVSRFQALERARNLKLDLVEV 123
            P+QFQ KPK EED+  GPRLND+I+A+ +RLV D  H++VSRF+ALERAR LKLDLVEV
Sbjct: 539 VPVQFQVKPKNEEDDTDGPRLNDQIKARQVRLVVDGEHSIVSRFEALERARKLKLDLVEV 598

Query: 124 DKNAKPPVCKIMDFHKEAYKKQEKDKERAKSKSEVTLRKGECKEVRISEKTESKDIKMKA 183
           DKN+ PPVCKIMD+HKE YKK+E  KERAKSKSE+T++K ECKEVR SEKTESKD+KMK+
Sbjct: 599 DKNSTPPVCKIMDYHKEMYKKKENFKERAKSKSEMTMKK-ECKEVRFSEKTESKDLKMKS 657

Query: 184 DMVKKLMEKGYRVKCKATSSNENADLAGSSLSRLLAQIEDVCVVESGPHIARKEVYMVVR 243
           DMV+KLMEKGYRVK KAT + + A L   ++SRL A IEDVCVVESGPH+A+K+ Y++VR
Sbjct: 658 DMVRKLMEKGYRVKVKATGNADQAML--DAISRLSALIEDVCVVESGPHLAKKDAYIIVR 715

Query: 244 HVKYGPSKKGAKKPQDAAQMALKAEEGSANSSDSIEDKNHNSAESGFKFEEVISDGDNHI 303
           H+KYGP+KKGAKK QDA +M  KAEEG     + +   + NS E+       I+DG+   
Sbjct: 716 HLKYGPAKKGAKKSQDAVRMDSKAEEGDV---EPLTTNSSNSVETPDTLTNSINDGN--- 769

Query: 304 FFSDASTKDKDSGSPAVLENRYKRADHPGENKSRSNT----------------------- 340
                     DS SP V+ENRYK+A++  ENK +SN                        
Sbjct: 770 ----------DSVSPPVVENRYKKANYRVENKFQSNAQAPPDVTENRYKQAEPRNRYQHE 819

Query: 341 ----PNTQVPPAVAENRYQRTEPRNRFQQTIPPNTTGPGVRDGGRW 382
               PN QVPP V ENRY + EPRNR+QQT P   T PG RD  RW
Sbjct: 820 NRFQPNAQVPPVVTENRYIQAEPRNRYQQTTP--NTSPGTRDANRW 863



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 10/83 (12%)

Query: 43  IPRPCSVFHG-RPSSV----YNSVRFFAAPIQFQPKPKKEEDNG--PRLNDEIRAQFIRL 95
           +P   S+FH  RP +V     NSVR +AAP+QFQPK K E+ +   P+LND+I+ ++++ 
Sbjct: 1   MPYSHSLFHNTRPINVSPIVLNSVRCYAAPVQFQPKHKNEDHDTDEPQLNDQIKDEYVKP 60

Query: 96  VSDDG---HTVVSRFQALERARN 115
           V DD    H   +    LE A+N
Sbjct: 61  VEDDADNKHHHNTTATQLENAKN 83


>Medtr1g112830.1 | DHHC-type zinc finger protein | HC |
           chr1:51116805-51114479 | 20130731
          Length = 634

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 15/123 (12%)

Query: 1   MAFLHQIGKRKLKTVCIQLRRCYIRLPHDSSLNSTPKP--YPSEIPRPCSVFHG-RP--- 54
           MAFLH+IGK  LKT   Q  RCY  LPH     STPKP   P+ +P   S+FH  RP   
Sbjct: 1   MAFLHRIGKSTLKTASFQFYRCYTHLPH----ASTPKPKTLPTVMPYSHSLFHSTRPINV 56

Query: 55  -SSVYNSVRFFAAPIQFQPKPKKEEDNGPRL--NDEIRAQFIRLVSDDGHTVVSRFQALE 111
             +V N+V F++A +QFQ  P+ E+ +   L  N +I+ Q+++ V DD  +  S  + +E
Sbjct: 57  SQTVSNNVSFYSALVQFQSIPRNEDHDTNWLPFNHQIKDQYVKSVVDDAMS--SEIKVME 114

Query: 112 RAR 114
           +  
Sbjct: 115 KVH 117


>Medtr4g130530.1 | translation initiation factor IF-3 | HC |
           chr4:54393562-54389242 | 20130731
          Length = 266

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 18/181 (9%)

Query: 24  IRLPHDSSLNSTPKPYPSEIPRPCSVFHG---RPSSVYNSVRFFAAPIQFQPKPKKEEDN 80
           + +PH  +L S+P      +P   +V +G   RPS+      F  AP      P+K+ D+
Sbjct: 24  LSIPHSLNLQSSPS---FTLPSHATVRYGVNLRPSAYGGGGNFRRAP------PEKDADD 74

Query: 81  GPRLN-DEIRAQFIRLV--SDDGHTVVSRFQALERARNLKLDLVEVDKNAKPPVCKIMDF 137
           G  L+   + +  +RL+  S +   VVS  QA+  A + +LDLV V   A PPV +IM++
Sbjct: 75  GQALDLSTLSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNY 134

Query: 138 HKEAYKKQEKDKERAKSKSEVTLRKGECKEVRISEKTESKDIKMKADMVKKLMEKGYRVK 197
            K  Y   E  K++   + +    + + KE+++    +  D  ++    +K +  G +VK
Sbjct: 135 SKYRY---ELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVK 191

Query: 198 C 198
            
Sbjct: 192 V 192


>Medtr4g130530.2 | translation initiation factor IF-3 | HC |
           chr4:54393562-54389216 | 20130731
          Length = 232

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 18/181 (9%)

Query: 24  IRLPHDSSLNSTPKPYPSEIPRPCSVFHG---RPSSVYNSVRFFAAPIQFQPKPKKEEDN 80
           + +PH  +L S+P      +P   +V +G   RPS+      F  AP      P+K+ D+
Sbjct: 24  LSIPHSLNLQSSPS---FTLPSHATVRYGVNLRPSAYGGGGNFRRAP------PEKDADD 74

Query: 81  GPRLN-DEIRAQFIRLV--SDDGHTVVSRFQALERARNLKLDLVEVDKNAKPPVCKIMDF 137
           G  L+   + +  +RL+  S +   VVS  QA+  A + +LDLV V   A PPV +IM++
Sbjct: 75  GQALDLSTLSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNY 134

Query: 138 HKEAYKKQEKDKERAKSKSEVTLRKGECKEVRISEKTESKDIKMKADMVKKLMEKGYRVK 197
            K  Y   E  K++   + +    + + KE+++    +  D  ++    +K +  G +VK
Sbjct: 135 SKYRY---ELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVK 191

Query: 198 C 198
            
Sbjct: 192 V 192


>Medtr4g130530.3 | translation initiation factor IF-3 | HC |
           chr4:54393562-54390973 | 20130731
          Length = 165

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 15/126 (11%)

Query: 24  IRLPHDSSLNSTPKPYPSEIPRPCSVFHG---RPSSVYNSVRFFAAPIQFQPKPKKEEDN 80
           + +PH  +L S+P      +P   +V +G   RPS+      F  AP      P+K+ D+
Sbjct: 24  LSIPHSLNLQSSPS---FTLPSHATVRYGVNLRPSAYGGGGNFRRAP------PEKDADD 74

Query: 81  GPRLN-DEIRAQFIRLV--SDDGHTVVSRFQALERARNLKLDLVEVDKNAKPPVCKIMDF 137
           G  L+   + +  +RL+  S +   VVS  QA+  A + +LDLV V   A PPV +IM++
Sbjct: 75  GQALDLSTLSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNY 134

Query: 138 HKEAYK 143
            K  Y+
Sbjct: 135 SKYRYE 140