Miyakogusa Predicted Gene

Lj0g3v0325879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0325879.1 Non Characterized Hit- tr|I1MDL1|I1MDL1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2934
PE=,92.04,0,SUBFAMILY NOT NAMED,NULL; NFRKB-RELATED,Nuclear factor
related to kappa-B-binding protein; seg,NULL,CUFF.22146.1
         (338 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g096000.1 | DNA-binding protein, putative | HC | chr2:4097...   584   e-167
Medtr2g096000.2 | DNA-binding protein, putative | HC | chr2:4096...   583   e-167

>Medtr2g096000.1 | DNA-binding protein, putative | HC |
            chr2:40970730-40974851 | 20130731
          Length = 1373

 Score =  584 bits (1505), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/339 (84%), Positives = 300/339 (88%), Gaps = 3/339 (0%)

Query: 1    MLVKLVDSFANWLKCGQETLQQIGSLPAPPLALMQVNLDEKERFRDLRAQKSLNTINPNS 60
            MLVKLVDSFANWLKCGQ+TL+QIGSLPAPPL LMQ+NLDEKERFRDLRAQKSLNTI+P+S
Sbjct: 1036 MLVKLVDSFANWLKCGQDTLKQIGSLPAPPLELMQINLDEKERFRDLRAQKSLNTISPSS 1095

Query: 61   EEVRTYFRKEEVLRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPP 120
            EEVR YFRKEE+LRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPP
Sbjct: 1096 EEVRAYFRKEELLRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPP 1155

Query: 121  HVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYIVEEVSDAQINQVVSGALDRLHYERD 180
            HVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYIVE+VSD +INQVVSGALDRLHYERD
Sbjct: 1156 HVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYIVEDVSDEKINQVVSGALDRLHYERD 1215

Query: 181  PCVQFDGERKLWVYLHXXXXXXXXXXXGTSSTKKWKRQKKDPADLTDQGAVTVAQQGTEE 240
            PCV FD ERKLWVYLH           GTSSTKKWKRQKKD AD +DQ  VTVA  GT E
Sbjct: 1216 PCVLFDQERKLWVYLHREREEEDFDDDGTSSTKKWKRQKKDVADQSDQAPVTVACNGTGE 1275

Query: 241  QSGYDLCSDLNVDPPVIDDDK-GVEFLSSDTRPNAEDHVDVNPASEEGNVCEGNSMAWEA 299
            QSGYDLCSDLNVDPP I+DDK  V+ L++DTRPNAED V VNP SE GN CE NSM WEA
Sbjct: 1276 QSGYDLCSDLNVDPPCIEDDKEAVQLLTTDTRPNAEDQVVVNPVSEVGNSCEDNSMTWEA 1335

Query: 300  LSLNPTATGELCQENSTNEDFDEESFGRERPVGLLSASL 338
            L LNPT   ELCQENSTNEDF +ESFGRERPVGLLSASL
Sbjct: 1336 LDLNPTR--ELCQENSTNEDFGDESFGRERPVGLLSASL 1372


>Medtr2g096000.2 | DNA-binding protein, putative | HC |
            chr2:40969983-40975546 | 20130731
          Length = 1346

 Score =  583 bits (1504), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/339 (84%), Positives = 300/339 (88%), Gaps = 3/339 (0%)

Query: 1    MLVKLVDSFANWLKCGQETLQQIGSLPAPPLALMQVNLDEKERFRDLRAQKSLNTINPNS 60
            MLVKLVDSFANWLKCGQ+TL+QIGSLPAPPL LMQ+NLDEKERFRDLRAQKSLNTI+P+S
Sbjct: 1009 MLVKLVDSFANWLKCGQDTLKQIGSLPAPPLELMQINLDEKERFRDLRAQKSLNTISPSS 1068

Query: 61   EEVRTYFRKEEVLRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPP 120
            EEVR YFRKEE+LRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPP
Sbjct: 1069 EEVRAYFRKEELLRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPP 1128

Query: 121  HVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYIVEEVSDAQINQVVSGALDRLHYERD 180
            HVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYIVE+VSD +INQVVSGALDRLHYERD
Sbjct: 1129 HVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYIVEDVSDEKINQVVSGALDRLHYERD 1188

Query: 181  PCVQFDGERKLWVYLHXXXXXXXXXXXGTSSTKKWKRQKKDPADLTDQGAVTVAQQGTEE 240
            PCV FD ERKLWVYLH           GTSSTKKWKRQKKD AD +DQ  VTVA  GT E
Sbjct: 1189 PCVLFDQERKLWVYLHREREEEDFDDDGTSSTKKWKRQKKDVADQSDQAPVTVACNGTGE 1248

Query: 241  QSGYDLCSDLNVDPPVIDDDK-GVEFLSSDTRPNAEDHVDVNPASEEGNVCEGNSMAWEA 299
            QSGYDLCSDLNVDPP I+DDK  V+ L++DTRPNAED V VNP SE GN CE NSM WEA
Sbjct: 1249 QSGYDLCSDLNVDPPCIEDDKEAVQLLTTDTRPNAEDQVVVNPVSEVGNSCEDNSMTWEA 1308

Query: 300  LSLNPTATGELCQENSTNEDFDEESFGRERPVGLLSASL 338
            L LNPT   ELCQENSTNEDF +ESFGRERPVGLLSASL
Sbjct: 1309 LDLNPTR--ELCQENSTNEDFGDESFGRERPVGLLSASL 1345