Miyakogusa Predicted Gene

Lj0g3v0324999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324999.1 Non Characterized Hit- tr|I1JRI0|I1JRI0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.27930
PE,92.05,0,SUBFAMILY NOT NAMED,NULL; TRAFFICKING PROTEIN PARTICLE
COMPLEX SUBUNIT 6B,NULL; Ligand-binding domai,CUFF.22086.1
         (176 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114210.2 | trafficking protein particle complex subunit-l...   345   1e-95
Medtr7g114210.3 | trafficking protein particle complex subunit-l...   345   1e-95
Medtr7g114210.1 | trafficking protein particle complex subunit-l...   345   1e-95

>Medtr7g114210.2 | trafficking protein particle complex subunit-like
           protein | HC | chr7:47114772-47111788 | 20130731
          Length = 176

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 162/176 (92%), Positives = 170/176 (96%)

Query: 1   MVREVSESCVDSLLTEMVSCYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60
           MVREVSESCVDSL+TEMV+CYCNRFYANKPELAARRIEAIGYQVG QLSERYTMERPRF 
Sbjct: 1   MVREVSESCVDSLMTEMVACYCNRFYANKPELAARRIEAIGYQVGQQLSERYTMERPRFG 60

Query: 61  DHLEAIKFICKDFWSEVFKKQVDNLKTNHRGTFVLQDNKFPWLSRMSVDPSAENVSSVED 120
           DHLEAIKFICKDFWSEVFKKQ+DNLKTNHRGTFVLQDNKFPWL+RMSVDPS +NVSSVED
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFPWLARMSVDPSTDNVSSVED 120

Query: 121 NTSPTPESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIKA 176
            ++PT ESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADIS+LPACSFVV IKA
Sbjct: 121 YSAPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISSLPACSFVVRIKA 176


>Medtr7g114210.3 | trafficking protein particle complex subunit-like
           protein | HC | chr7:47114772-47111709 | 20130731
          Length = 176

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 162/176 (92%), Positives = 170/176 (96%)

Query: 1   MVREVSESCVDSLLTEMVSCYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60
           MVREVSESCVDSL+TEMV+CYCNRFYANKPELAARRIEAIGYQVG QLSERYTMERPRF 
Sbjct: 1   MVREVSESCVDSLMTEMVACYCNRFYANKPELAARRIEAIGYQVGQQLSERYTMERPRFG 60

Query: 61  DHLEAIKFICKDFWSEVFKKQVDNLKTNHRGTFVLQDNKFPWLSRMSVDPSAENVSSVED 120
           DHLEAIKFICKDFWSEVFKKQ+DNLKTNHRGTFVLQDNKFPWL+RMSVDPS +NVSSVED
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFPWLARMSVDPSTDNVSSVED 120

Query: 121 NTSPTPESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIKA 176
            ++PT ESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADIS+LPACSFVV IKA
Sbjct: 121 YSAPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISSLPACSFVVRIKA 176


>Medtr7g114210.1 | trafficking protein particle complex subunit-like
           protein | HC | chr7:47114772-47111788 | 20130731
          Length = 176

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 162/176 (92%), Positives = 170/176 (96%)

Query: 1   MVREVSESCVDSLLTEMVSCYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60
           MVREVSESCVDSL+TEMV+CYCNRFYANKPELAARRIEAIGYQVG QLSERYTMERPRF 
Sbjct: 1   MVREVSESCVDSLMTEMVACYCNRFYANKPELAARRIEAIGYQVGQQLSERYTMERPRFG 60

Query: 61  DHLEAIKFICKDFWSEVFKKQVDNLKTNHRGTFVLQDNKFPWLSRMSVDPSAENVSSVED 120
           DHLEAIKFICKDFWSEVFKKQ+DNLKTNHRGTFVLQDNKFPWL+RMSVDPS +NVSSVED
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFPWLARMSVDPSTDNVSSVED 120

Query: 121 NTSPTPESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIKA 176
            ++PT ESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADIS+LPACSFVV IKA
Sbjct: 121 YSAPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISSLPACSFVVRIKA 176