Miyakogusa Predicted Gene

Lj0g3v0324939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324939.1 Non Characterized Hit- tr|I3SZ76|I3SZ76_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.17,0,60S
RIBOSOMAL PROTEIN L34,Ribosomal protein L34Ae;
Ribosomal_L34e,Ribosomal protein L34Ae; RIBOSOMAL,CUFF.22094.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g040570.1 | 60S ribosomal L34-like protein | HC | chr5:178...   191   2e-49
Medtr7g010150.1 | 60S ribosomal L34-like protein | HC | chr7:242...   191   2e-49
Medtr8g467460.1 | 60S ribosomal L34-like protein | HC | chr8:242...   190   2e-49
Medtr7g011050.1 | 60S ribosomal L34-like protein | HC | chr7:286...   119   5e-28

>Medtr5g040570.1 | 60S ribosomal L34-like protein | HC |
          chr5:17828419-17825776 | 20130731
          Length = 120

 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/95 (98%), Positives = 94/95 (98%)

Query: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRL RNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95


>Medtr7g010150.1 | 60S ribosomal L34-like protein | HC |
          chr7:2420735-2418553 | 20130731
          Length = 120

 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/95 (98%), Positives = 94/95 (98%)

Query: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRL RNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95


>Medtr8g467460.1 | 60S ribosomal L34-like protein | HC |
          chr8:24242180-24246164 | 20130731
          Length = 120

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/95 (98%), Positives = 94/95 (98%)

Query: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRL RNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95


>Medtr7g011050.1 | 60S ribosomal L34-like protein | HC |
          chr7:2864944-2864588 | 20130731
          Length = 102

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 66/95 (69%), Gaps = 16/95 (16%)

Query: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MV R TY  RH+Y TK NQHRVVKTPGG+LVY TTKKRAS P CP               
Sbjct: 1  MVHRFTYCNRHTYTTKFNQHRVVKTPGGRLVYHTTKKRASEPMCP--------------- 45

Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
           YKRSRL RNR TVN AYGG+LSGGAVRE IIRAF
Sbjct: 46 -YKRSRLPRNRSTVNCAYGGILSGGAVREMIIRAF 79