Miyakogusa Predicted Gene

Lj0g3v0324759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324759.1 Non Characterized Hit- tr|G7J5G4|G7J5G4_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,69.12,8e-19,RST,RST domain of plant C-terminal,CUFF.22066.1
         (75 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077870.1 | inactive poly [ADP-ribose] polymerase SRO4 | H...    99   7e-22
Medtr4g105740.1 | inactive poly [ADP-ribose] polymerase SRO4 | H...    86   7e-18
Medtr4g105740.2 | inactive poly [ADP-ribose] polymerase SRO4 | H...    85   2e-17

>Medtr3g077870.1 | inactive poly [ADP-ribose] polymerase SRO4 | HC |
           chr3:35056982-35060567 | 20130731
          Length = 327

 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 1   MPFPTLISALSKVLPQPDIALLSRLHKAKQERKISRQELIQKVRQIAGDKLLTAVIKSYR 60
           +PFPTLIS LSKV PQ DIAL+ + +KA++E+KISR ELI+KVRQIAGDKLL ++IK YR
Sbjct: 251 VPFPTLISMLSKVSPQLDIALICKFYKARKEKKISRHELIEKVRQIAGDKLLFSIIKYYR 310

Query: 61  AKKKPCKF 68
           AKKKP  F
Sbjct: 311 AKKKPTSF 318


>Medtr4g105740.1 | inactive poly [ADP-ribose] polymerase SRO4 | HC |
           chr4:43896289-43900298 | 20130731
          Length = 325

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 53/63 (84%)

Query: 1   MPFPTLISALSKVLPQPDIALLSRLHKAKQERKISRQELIQKVRQIAGDKLLTAVIKSYR 60
           M FPTLISALSK+LP  DI  +++ HK  +++KISR E+IQKVR++AGDKLL +VIKS+R
Sbjct: 242 MQFPTLISALSKILPPSDIVSIAKFHKEYRDKKISRHEMIQKVRKVAGDKLLFSVIKSFR 301

Query: 61  AKK 63
           AKK
Sbjct: 302 AKK 304


>Medtr4g105740.2 | inactive poly [ADP-ribose] polymerase SRO4 | HC |
           chr4:43896318-43900298 | 20130731
          Length = 310

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 1   MPFPTLISALSKVLPQPDIALLSRLHKAKQERKISRQELIQKVRQIAGDKLLTAVIKSYR 60
           M FPTLISALSK+LP  DI  +++ HK  +++KISR E+IQKVR++AGDKLL +VIKS+R
Sbjct: 242 MQFPTLISALSKILPPSDIVSIAKFHKEYRDKKISRHEMIQKVRKVAGDKLLFSVIKSFR 301

Query: 61  AK 62
           AK
Sbjct: 302 AK 303