Miyakogusa Predicted Gene

Lj0g3v0324239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324239.1 Non Characterized Hit- tr|I3T9S6|I3T9S6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,95.96,0,seg,NULL;
Large family of predicted nucleotide-binding,Nucleotide binding
protein, PINc; UNCHARACTER,CUFF.22062.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g116720.1 | rRNA-processing protein PIN domain protein | H...   343   5e-95
Medtr6g086290.1 | rRNA-processing protein PIN domain protein | H...   342   1e-94
Medtr6g086290.2 | rRNA-processing protein PIN domain protein | H...   283   9e-77
Medtr5g071380.1 | rRNA-processing protein PIN domain protein | H...    72   5e-13
Medtr2g097630.5 | rRNA-processing protein PIN domain protein | H...    68   5e-12
Medtr2g097630.8 | rRNA-processing protein PIN domain protein | H...    68   6e-12
Medtr2g097630.6 | rRNA-processing protein PIN domain protein | H...    68   6e-12
Medtr2g097630.4 | rRNA-processing protein PIN domain protein | H...    68   7e-12
Medtr2g097630.3 | rRNA-processing protein PIN domain protein | H...    67   9e-12
Medtr2g097630.2 | rRNA-processing protein PIN domain protein | H...    67   9e-12
Medtr2g097630.7 | rRNA-processing protein PIN domain protein | H...    67   9e-12
Medtr2g097630.1 | rRNA-processing protein PIN domain protein | H...    67   1e-11

>Medtr7g116720.1 | rRNA-processing protein PIN domain protein | HC |
           chr7:48203910-48200196 | 20130731
          Length = 198

 Score =  343 bits (880), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 165/198 (83%), Positives = 176/198 (88%)

Query: 1   MGKAKKGPKFAVRKKLVTSKAIKNYXXXXXXXXXXXXXXXXXXRNIPSYSSALFFQYNTA 60
           MGKAKKGPKFAV KK+VTSKAIK+Y                  RN+P++SSALFF YNTA
Sbjct: 1   MGKAKKGPKFAVMKKMVTSKAIKSYKEAVLNPEKKNTLKEKLPRNVPTHSSALFFHYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG KYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGTKYRVALR 120

Query: 121 IAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKH 180
           IAKDPRFER+LCTH+GTYADDCLV+RVT+ KC+IVATCDRDLKRRIRKIPGVPIMYITKH
Sbjct: 121 IAKDPRFERLLCTHRGTYADDCLVDRVTESKCFIVATCDRDLKRRIRKIPGVPIMYITKH 180

Query: 181 KYSIERLPEATIGGAPRI 198
           +YSIERLPEATIGGAPRI
Sbjct: 181 RYSIERLPEATIGGAPRI 198


>Medtr6g086290.1 | rRNA-processing protein PIN domain protein | HC |
           chr6:32397047-32403700 | 20130731
          Length = 198

 Score =  342 bits (877), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/198 (82%), Positives = 175/198 (88%)

Query: 1   MGKAKKGPKFAVRKKLVTSKAIKNYXXXXXXXXXXXXXXXXXXRNIPSYSSALFFQYNTA 60
           MG AKKGPKFAV KK+VTSKAIKNY                  RN+P++SSALFF YNTA
Sbjct: 1   MGNAKKGPKFAVMKKMVTSKAIKNYKEAVLNPEKKNTLKEKLPRNVPTHSSALFFHYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVL+DTNFINFSIQNKLDLEKGMMDCL+AKCTPCITDCVMAELEKLG KYRVALR
Sbjct: 61  LGPPYRVLIDTNFINFSIQNKLDLEKGMMDCLFAKCTPCITDCVMAELEKLGTKYRVALR 120

Query: 121 IAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKH 180
           IAKDPRFER+LCTH+GTYADDCLV+RVT+ KC+IVATCDRDLKRRIRKIPGVPIMYITKH
Sbjct: 121 IAKDPRFERLLCTHRGTYADDCLVDRVTESKCFIVATCDRDLKRRIRKIPGVPIMYITKH 180

Query: 181 KYSIERLPEATIGGAPRI 198
           +YSIERLPEATIGGAPRI
Sbjct: 181 RYSIERLPEATIGGAPRI 198


>Medtr6g086290.2 | rRNA-processing protein PIN domain protein | HC |
           chr6:32397047-32403700 | 20130731
          Length = 170

 Score =  283 bits (723), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 146/169 (86%)

Query: 1   MGKAKKGPKFAVRKKLVTSKAIKNYXXXXXXXXXXXXXXXXXXRNIPSYSSALFFQYNTA 60
           MG AKKGPKFAV KK+VTSKAIKNY                  RN+P++SSALFF YNTA
Sbjct: 1   MGNAKKGPKFAVMKKMVTSKAIKNYKEAVLNPEKKNTLKEKLPRNVPTHSSALFFHYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVL+DTNFINFSIQNKLDLEKGMMDCL+AKCTPCITDCVMAELEKLG KYRVALR
Sbjct: 61  LGPPYRVLIDTNFINFSIQNKLDLEKGMMDCLFAKCTPCITDCVMAELEKLGTKYRVALR 120

Query: 121 IAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKI 169
           IAKDPRFER+LCTH+GTYADDCLV+RVT+ KC+IVATCDRDLKRRIRK+
Sbjct: 121 IAKDPRFERLLCTHRGTYADDCLVDRVTESKCFIVATCDRDLKRRIRKV 169


>Medtr5g071380.1 | rRNA-processing protein PIN domain protein | HC |
           chr5:30291814-30287850 | 20130731
          Length = 289

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F+N  I N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 29  PYKVLCDGTFVNHLIVNRITPADTALANILSATVKLYTTRCVVAELKRLGKSYSEALDAA 88

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            D    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 89  NDLIIAR--CEHDKCVRADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 143


>Medtr2g097630.5 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701166-41706447 | 20130731
          Length = 247

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F++  + N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 25  PYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELKRLGKSYSEALDAA 84

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            +    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 85  NNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 139


>Medtr2g097630.8 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701039-41706398 | 20130731
          Length = 239

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F++  + N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 25  PYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELKRLGKSYSEALDAA 84

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            +    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 85  NNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 139


>Medtr2g097630.6 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701039-41706447 | 20130731
          Length = 239

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F++  + N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 25  PYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELKRLGKSYSEALDAA 84

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            +    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 85  NNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 139


>Medtr2g097630.4 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701257-41706398 | 20130731
          Length = 277

 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 6/139 (4%)

Query: 51  SALFFQYNTALGPPYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELE 109
           S  F+        PY+VL D  F++  + N++   +  + + L A      T CV+AEL+
Sbjct: 12  SLTFYTACFGFRKPYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELK 71

Query: 110 KLGQKYRVALRIAKDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRI 166
           +LG+ Y  AL  A +    R  C H K   AD C++E V ++    + VA+ D DL++++
Sbjct: 72  RLGKSYSEALDAANNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKL 129

Query: 167 RKIPGVPIMYITKHKYSIE 185
            ++PGVP+++  ++   +E
Sbjct: 130 EEVPGVPLIFGLRNALFLE 148


>Medtr2g097630.3 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701159-41706462 | 20130731
          Length = 285

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F++  + N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 25  PYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELKRLGKSYSEALDAA 84

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            +    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 85  NNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 139


>Medtr2g097630.2 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701039-41706462 | 20130731
          Length = 285

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F++  + N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 25  PYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELKRLGKSYSEALDAA 84

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            +    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 85  NNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 139


>Medtr2g097630.7 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701039-41706398 | 20130731
          Length = 285

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F++  + N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 25  PYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELKRLGKSYSEALDAA 84

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            +    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 85  NNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 139


>Medtr2g097630.1 | rRNA-processing protein PIN domain protein | HC |
           chr2:41701482-41706061 | 20130731
          Length = 289

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 64  PYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIA 122
           PY+VL D  F++  + N++   +  + + L A      T CV+AEL++LG+ Y  AL  A
Sbjct: 29  PYKVLCDGTFVHHLVVNRITPADTALANILSATVKLYTTRCVLAELKRLGKSYSEALDAA 88

Query: 123 KDPRFERILCTH-KGTYADDCLVERVTQHKC--YIVATCDRDLKRRIRKIPGVPIMY 176
            +    R  C H K   AD C++E V ++    + VA+ D DL++++ ++PGVP+++
Sbjct: 89  NNLIIAR--CEHDKCARADSCIMEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIF 143