Miyakogusa Predicted Gene

Lj0g3v0324209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324209.1 Non Characterized Hit- tr|D8SBN2|D8SBN2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,32.14,5e-18,FAMILY NOT NAMED,NULL,CUFF.22059.1
         (284 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g024400.1 | PPR containing plant-like protein | HC | chr3:...   421   e-118
Medtr3g024400.2 | PPR containing plant-like protein | HC | chr3:...   313   1e-85
Medtr6g053090.1 | PPR containing plant protein | HC | chr6:19039...   185   4e-47
Medtr5g012120.2 | PPR containing plant-like protein | HC | chr5:...   143   2e-34
Medtr5g012120.1 | PPR containing plant-like protein | HC | chr5:...   143   2e-34
Medtr5g012120.3 | PPR containing plant-like protein | HC | chr5:...   143   2e-34
Medtr5g012120.4 | PPR containing plant-like protein | HC | chr5:...   143   2e-34
Medtr5g012120.5 | PPR containing plant-like protein | HC | chr5:...   142   3e-34
Medtr5g012120.7 | PPR containing plant-like protein | HC | chr5:...   142   3e-34
Medtr5g012120.6 | PPR containing plant-like protein | HC | chr5:...   142   3e-34

>Medtr3g024400.1 | PPR containing plant-like protein | HC |
           chr3:7565336-7559308 | 20130731
          Length = 277

 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/286 (74%), Positives = 229/286 (80%), Gaps = 11/286 (3%)

Query: 1   MLITFERSILFPLLPSRTCQANTDTKTALLWGTKFSTATITISPKTRCIYCMFVQSKLSQ 60
           M IT E SIL P+L   TC    +         KF ++ I+I PKT CI C  V SKLS 
Sbjct: 1   MPITIESSILSPILLQWTCLTKPN---------KFLSSAISIPPKTSCISCKVVGSKLSP 51

Query: 61  NV--GDPXXXXXXXXXXXXXXXHHLWKKRDSAQSGQKALALVRTVSELPNEKEAVYGALD 118
           NV  G                 HHLW+++DSAQSGQKAL LVRT+ ELPNEKEAVYGALD
Sbjct: 52  NVVGGSVEKDKKGKKKKGGKIEHHLWQRKDSAQSGQKALTLVRTICELPNEKEAVYGALD 111

Query: 119 KWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDQ 178
           KW+AWETEFPLIAV KALKILR++ QWVRVIQ+AKWMLSKGQGATMGTYDTLLLAFDM+Q
Sbjct: 112 KWSAWETEFPLIAVAKALKILRKRGQWVRVIQLAKWMLSKGQGATMGTYDTLLLAFDMEQ 171

Query: 179 RVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADMEELQVKPDEDTV 238
           RVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHN+PDKIVEVFADMEEL+VKPDEDTV
Sbjct: 172 RVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNLPDKIVEVFADMEELRVKPDEDTV 231

Query: 239 RKVASAFRNLGQEEKRKLVIKRYGLKWKYIHFNGERVRVRRETWED 284
           RKVASAFR LGQEEKRKLVIKRYGLKWKYIHFNGERV+VR    ED
Sbjct: 232 RKVASAFRILGQEEKRKLVIKRYGLKWKYIHFNGERVKVRTHASED 277


>Medtr3g024400.2 | PPR containing plant-like protein | HC |
           chr3:7565336-7559308 | 20130731
          Length = 229

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/286 (59%), Positives = 184/286 (64%), Gaps = 59/286 (20%)

Query: 1   MLITFERSILFPLLPSRTCQANTDTKTALLWGTKFSTATITISPKTRCIYCMFVQSKLSQ 60
           M IT E SIL P+L   TC    +         KF ++ I+I PKT CI C  V SKLS 
Sbjct: 1   MPITIESSILSPILLQWTCLTKPN---------KFLSSAISIPPKTSCISCKVVGSKLSP 51

Query: 61  NV--GDPXXXXXXXXXXXXXXXHHLWKKRDSAQSGQKALALVRTVSELPNEKEAVYGALD 118
           NV  G                 HHLW+++DSAQSGQKAL LVRT+               
Sbjct: 52  NVVGGSVEKDKKGKKKKGGKIEHHLWQRKDSAQSGQKALTLVRTL--------------- 96

Query: 119 KWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDQ 178
                                            AKWMLSKGQGATMGTYDTLLLAFDM+Q
Sbjct: 97  ---------------------------------AKWMLSKGQGATMGTYDTLLLAFDMEQ 123

Query: 179 RVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADMEELQVKPDEDTV 238
           RVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHN+PDKIVEVFADMEEL+VKPDEDTV
Sbjct: 124 RVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNLPDKIVEVFADMEELRVKPDEDTV 183

Query: 239 RKVASAFRNLGQEEKRKLVIKRYGLKWKYIHFNGERVRVRRETWED 284
           RKVASAFR LGQEEKRKLVIKRYGLKWKYIHFNGERV+VR    ED
Sbjct: 184 RKVASAFRILGQEEKRKLVIKRYGLKWKYIHFNGERVKVRTHASED 229


>Medtr6g053090.1 | PPR containing plant protein | HC |
           chr6:19039735-19044135 | 20130731
          Length = 354

 Score =  185 bits (470), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 83  LWKKRDSAQSGQKALALVRTVSELPNEKEAVYGALDKWTAWETEFPLIAVVKALKILRRK 142
           +WK      +  KA  LV+++ EL N KE VYGALD + AWE EFP+I V K LK L  +
Sbjct: 92  VWKTNKKIGTISKAAKLVQSIKELSNVKEEVYGALDTYVAWELEFPIITVKKVLKTLEYE 151

Query: 143 RQWVRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRL 202
           ++W R+IQV KWMLSKGQG TMG+Y TLL A   D RVDEAE LW  ++  +  S+ +R 
Sbjct: 152 KEWKRIIQVTKWMLSKGQGKTMGSYFTLLNALAEDDRVDEAEELWTKLLMQYTESLPRRF 211

Query: 203 FSRMISVYDHHNMPDKIVEVFADMEELQVKPDEDTVRKVASAFRNLGQEEKRKLVIKRYG 262
           F +MIS+Y    + DK+ EVFADMEEL VKP    V  V + F+ LG  +K + + K+Y 
Sbjct: 212 FDKMISIYCKRGLHDKMFEVFADMEELTVKPSSSVVSMVGNVFKELGMMDKYEKLHKKYP 271

Query: 263 LKWKYIHFNGERVRVR 278
              +YI   G+RVR+R
Sbjct: 272 -PLQYI--KGKRVRIR 284


>Medtr5g012120.2 | PPR containing plant-like protein | HC |
           chr5:3585610-3590874 | 20130731
          Length = 274

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 108 NEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTY 167
           + KEA+YGALD W AWE  FP+ ++   L  L +++QW R++QV KWMLSKGQG TMGTY
Sbjct: 82  DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 141

Query: 168 DTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADME 227
             L+ A DMD RV EA   W M I   + SV  +L   MISVY  +NM + +V +F  +E
Sbjct: 142 GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 201

Query: 228 ELQVKP-DEDTVRKVASAFRNLGQEEKRKLVIKRY 261
               KP D+  ++KVA+A+  LG  E+++ V+++Y
Sbjct: 202 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKY 236


>Medtr5g012120.1 | PPR containing plant-like protein | HC |
           chr5:3585610-3590785 | 20130731
          Length = 274

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 108 NEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTY 167
           + KEA+YGALD W AWE  FP+ ++   L  L +++QW R++QV KWMLSKGQG TMGTY
Sbjct: 82  DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 141

Query: 168 DTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADME 227
             L+ A DMD RV EA   W M I   + SV  +L   MISVY  +NM + +V +F  +E
Sbjct: 142 GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 201

Query: 228 ELQVKP-DEDTVRKVASAFRNLGQEEKRKLVIKRY 261
               KP D+  ++KVA+A+  LG  E+++ V+++Y
Sbjct: 202 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKY 236


>Medtr5g012120.3 | PPR containing plant-like protein | HC |
           chr5:3585610-3590874 | 20130731
          Length = 274

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 108 NEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTY 167
           + KEA+YGALD W AWE  FP+ ++   L  L +++QW R++QV KWMLSKGQG TMGTY
Sbjct: 82  DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 141

Query: 168 DTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADME 227
             L+ A DMD RV EA   W M I   + SV  +L   MISVY  +NM + +V +F  +E
Sbjct: 142 GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 201

Query: 228 ELQVKP-DEDTVRKVASAFRNLGQEEKRKLVIKRY 261
               KP D+  ++KVA+A+  LG  E+++ V+++Y
Sbjct: 202 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKY 236


>Medtr5g012120.4 | PPR containing plant-like protein | HC |
           chr5:3585610-3590862 | 20130731
          Length = 274

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 108 NEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTY 167
           + KEA+YGALD W AWE  FP+ ++   L  L +++QW R++QV KWMLSKGQG TMGTY
Sbjct: 82  DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 141

Query: 168 DTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADME 227
             L+ A DMD RV EA   W M I   + SV  +L   MISVY  +NM + +V +F  +E
Sbjct: 142 GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 201

Query: 228 ELQVKP-DEDTVRKVASAFRNLGQEEKRKLVIKRY 261
               KP D+  ++KVA+A+  LG  E+++ V+++Y
Sbjct: 202 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKY 236


>Medtr5g012120.5 | PPR containing plant-like protein | HC |
           chr5:3585610-3590862 | 20130731
          Length = 197

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 108 NEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTY 167
           + KEA+YGALD W AWE  FP+ ++   L  L +++QW R++QV KWMLSKGQG TMGTY
Sbjct: 5   DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 64

Query: 168 DTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADME 227
             L+ A DMD RV EA   W M I   + SV  +L   MISVY  +NM + +V +F  +E
Sbjct: 65  GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 124

Query: 228 ELQVKP-DEDTVRKVASAFRNLGQEEKRKLVIKRY 261
               KP D+  ++KVA+A+  LG  E+++ V+++Y
Sbjct: 125 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKY 159


>Medtr5g012120.7 | PPR containing plant-like protein | HC |
           chr5:3585610-3590874 | 20130731
          Length = 197

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 108 NEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTY 167
           + KEA+YGALD W AWE  FP+ ++   L  L +++QW R++QV KWMLSKGQG TMGTY
Sbjct: 5   DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 64

Query: 168 DTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADME 227
             L+ A DMD RV EA   W M I   + SV  +L   MISVY  +NM + +V +F  +E
Sbjct: 65  GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 124

Query: 228 ELQVKP-DEDTVRKVASAFRNLGQEEKRKLVIKRY 261
               KP D+  ++KVA+A+  LG  E+++ V+++Y
Sbjct: 125 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKY 159


>Medtr5g012120.6 | PPR containing plant-like protein | HC |
           chr5:3585610-3590874 | 20130731
          Length = 197

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 108 NEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQGATMGTY 167
           + KEA+YGALD W AWE  FP+ ++   L  L +++QW R++QV KWMLSKGQG TMGTY
Sbjct: 5   DSKEAIYGALDAWVAWEQNFPIGSLRNILLCLEKEQQWHRIVQVIKWMLSKGQGTTMGTY 64

Query: 168 DTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVFADME 227
             L+ A DMD RV EA   W M I   + SV  +L   MISVY  +NM + +V +F  +E
Sbjct: 65  GQLIRALDMDHRVGEAHKFWEMKIGTDLHSVPWQLCHLMISVYYRNNMLEDLVRLFKGLE 124

Query: 228 ELQVKP-DEDTVRKVASAFRNLGQEEKRKLVIKRY 261
               KP D+  ++KVA+A+  LG  E+++ V+++Y
Sbjct: 125 AFDRKPRDKLIIQKVANAYEMLGLIEEKERVMEKY 159