Miyakogusa Predicted Gene

Lj0g3v0324149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324149.1 tr|B7FHC6|B7FHC6_MEDTR Iron sulfur cluster
assembly protein OS=Medicago truncatula GN=MTR_3g077720
P,78.79,6e-36,IRON-SULFUR CLUSTER ASSEMBLY ENZYME ISCU,
MITOCHONDRIAL,NULL; IRON-SULFUR CLUSTER ASSEMBLY ENZYME
(N,CUFF.22029.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077720.1 | iron-sulfur cluster assembly protein IscU | HC...   155   6e-39
Medtr3g077730.1 | iron-sulfur cluster assembly protein IscU | HC...   134   2e-32

>Medtr3g077720.1 | iron-sulfur cluster assembly protein IscU | HC |
           chr3:34952962-34954984 | 20130731
          Length = 164

 Score =  155 bits (393), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/99 (79%), Positives = 88/99 (88%), Gaps = 3/99 (3%)

Query: 1   MKLQIRVDETGKVIDACYKTFGCVSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSLP 60
           MKLQI+VDE GK+IDA +KTFGC SAIASSSVATEWV GK+MEEVLTIKNTEIAKHLSLP
Sbjct: 66  MKLQIKVDENGKIIDARFKTFGCGSAIASSSVATEWVKGKQMEEVLTIKNTEIAKHLSLP 125

Query: 61  PVKLHCSMLAEDAMKAAVKDLVSKRGP---ASGEKAATA 96
           PVKLHCSMLAEDA+KAAVKD  +KR     A+G+K+ATA
Sbjct: 126 PVKLHCSMLAEDAIKAAVKDYEAKRASATAATGDKSATA 164


>Medtr3g077730.1 | iron-sulfur cluster assembly protein IscU | HC |
           chr3:34956954-34958945 | 20130731
          Length = 160

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 76/89 (85%)

Query: 1   MKLQIRVDETGKVIDACYKTFGCVSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSLP 60
           MKL I+V E GK+++AC+KTFGC S IASSSVATEWV  K +EEVLTIKNTEI KHL+LP
Sbjct: 41  MKLHIKVVENGKIVEACFKTFGCGSTIASSSVATEWVKRKTIEEVLTIKNTEIPKHLNLP 100

Query: 61  PVKLHCSMLAEDAMKAAVKDLVSKRGPAS 89
           PVKLHCSMLAEDA+KAAVKD  +KR  A+
Sbjct: 101 PVKLHCSMLAEDAIKAAVKDYEAKRASAT 129