Miyakogusa Predicted Gene

Lj0g3v0324039.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324039.2 Non Characterized Hit- tr|C5XSM8|C5XSM8_SORBI
Putative uncharacterized protein Sb04g020760 OS=Sorghu,27.01,4e-16,no
description,Zinc finger, RING/FYVE/PHD-type; no
description,Homeodomain-like; Myb_DNA-bind_6,NULL,CUFF.22011.2
         (658 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g005950.3 | PHD-finger protein | HC | chr2:397934-401066 |...   269   8e-72
Medtr2g005950.1 | PHD-finger protein | HC | chr2:397934-401235 |...   266   6e-71
Medtr2g005950.2 | PHD-finger protein | HC | chr2:397934-401066 |...   265   9e-71
Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351...   195   1e-49
Medtr3g082160.1 | myb-like DNA-binding domain protein | HC | chr...    81   4e-15

>Medtr2g005950.3 | PHD-finger protein | HC | chr2:397934-401066 |
           20130731
          Length = 477

 Score =  269 bits (687), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 150/285 (52%), Positives = 187/285 (65%), Gaps = 33/285 (11%)

Query: 115 HDTDSNDSQQTVASDKFQDDISNGCGIEISSDRFVSEGDKNNLMKKKHEENFSDMKRKKG 174
           H   SN SQ+TV+SDK QDD S            V + +  NL+ K+ +++  D K  KG
Sbjct: 203 HLKGSNLSQKTVSSDKSQDDTS------------VYQCENLNLVMKRRKKDSHDKKFNKG 250

Query: 175 SQLLVCEATTVPSVAPQSCLDSTLNVCPQHVSRVESCQTTSMDEIDDTVPVEPIPTIDN- 233
           SQLLV EAT+VP + P+SC+    N+ P+H S VE C+   +DE +DTV VEPIPT D+ 
Sbjct: 251 SQLLVSEATSVPLLVPESCIGMLTNIYPRHTSGVEPCRNKLIDEANDTVHVEPIPTNDDG 310

Query: 234 NANNIQLMIDESQPEQKEPSVKSLHTSQQPVASNKTVIGTVNGCAAK------------- 280
           NA+ +Q M DESQP+QKEP+V SL  SQ+P AS+K V+ TVN C A+             
Sbjct: 311 NADKVQHMTDESQPKQKEPNVASLKGSQKPAASDKAVVDTVNDCGAELSSDSDVYYNEKI 370

Query: 281 -----KYEYLCSRYTLGRDLPAMTESTEQNLCMKCNEGGKLMVCKTTTCQLMMHKNCLGA 335
                K E+L S++  G+DLPAMTES  QNLC KCNE G+L+VC  TTC LM+HKNCLG 
Sbjct: 371 DLTAIKAEFLSSQHASGQDLPAMTESRGQNLCSKCNEAGQLLVC--TTCPLMLHKNCLGD 428

Query: 336 SCQLDANGNVFCPFCAYSHTISEYLEAKKKASLARKELAFFISRG 380
           S QL+A GN  CPFC YSH ISEYLEAKK +S ARKELA F S+G
Sbjct: 429 SAQLEAKGNFLCPFCKYSHAISEYLEAKKISSSARKELAIFNSKG 473


>Medtr2g005950.1 | PHD-finger protein | HC | chr2:397934-401235 |
           20130731
          Length = 499

 Score =  266 bits (679), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 152/294 (51%), Positives = 188/294 (63%), Gaps = 39/294 (13%)

Query: 115 HDTDSNDSQQTVASDKFQDDISNGCGIEISSDRFVSEGDKNNLMKKKHEENFSDMKRKKG 174
           H   SN SQ+TV+SDK QDD S            V + +  NL+ K+ +++  D K  KG
Sbjct: 203 HLKGSNLSQKTVSSDKSQDDTS------------VYQCENLNLVMKRRKKDSHDKKFNKG 250

Query: 175 SQLLVCEATTVPSVAPQSCLDSTLNVCPQHVSRVESCQTTSMDEIDDTVPVEPIPTIDN- 233
           SQLLV EAT+VP + P+SC+    N+ P+H S VE C+   +DE +DTV VEPIPT D+ 
Sbjct: 251 SQLLVSEATSVPLLVPESCIGMLTNIYPRHTSGVEPCRNKLIDEANDTVHVEPIPTNDDG 310

Query: 234 NANNIQLMIDESQPEQKEPSVKSLHTSQQPVASNKTVIGTVNGCAAK------------- 280
           NA+ +Q M DESQP+QKEP+V SL  SQ+P AS+K V+ TVN C A+             
Sbjct: 311 NADKVQHMTDESQPKQKEPNVASLKGSQKPAASDKAVVDTVNDCGAELSSDSDVYYNEKI 370

Query: 281 -----KYEYLCSRYTLGRDLPAMTESTEQNLCMKCNEGGKLMVCKTTTCQLMMHKNCLGA 335
                K E+L S++  G+DLPAMTES  QNLC KCNE G+L+VC  TTC LM+HKNCLG 
Sbjct: 371 DLTAIKAEFLSSQHASGQDLPAMTESRGQNLCSKCNEAGQLLVC--TTCPLMLHKNCLGD 428

Query: 336 SCQLDANGNVFCPFCAYSHTISEYLEAKKKASLARKELAFFISRGISNQPAERV 389
           S QL+A GN  CPFC YSH ISEYLEAKK +S ARKELA F      N PA  V
Sbjct: 429 SAQLEAKGNFLCPFCKYSHAISEYLEAKKISSSARKELAIF------NSPAAGV 476


>Medtr2g005950.2 | PHD-finger protein | HC | chr2:397934-401066 |
           20130731
          Length = 475

 Score =  265 bits (678), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 148/281 (52%), Positives = 184/281 (65%), Gaps = 33/281 (11%)

Query: 115 HDTDSNDSQQTVASDKFQDDISNGCGIEISSDRFVSEGDKNNLMKKKHEENFSDMKRKKG 174
           H   SN SQ+TV+SDK QDD S            V + +  NL+ K+ +++  D K  KG
Sbjct: 203 HLKGSNLSQKTVSSDKSQDDTS------------VYQCENLNLVMKRRKKDSHDKKFNKG 250

Query: 175 SQLLVCEATTVPSVAPQSCLDSTLNVCPQHVSRVESCQTTSMDEIDDTVPVEPIPTIDN- 233
           SQLLV EAT+VP + P+SC+    N+ P+H S VE C+   +DE +DTV VEPIPT D+ 
Sbjct: 251 SQLLVSEATSVPLLVPESCIGMLTNIYPRHTSGVEPCRNKLIDEANDTVHVEPIPTNDDG 310

Query: 234 NANNIQLMIDESQPEQKEPSVKSLHTSQQPVASNKTVIGTVNGCAAK------------- 280
           NA+ +Q M DESQP+QKEP+V SL  SQ+P AS+K V+ TVN C A+             
Sbjct: 311 NADKVQHMTDESQPKQKEPNVASLKGSQKPAASDKAVVDTVNDCGAELSSDSDVYYNEKI 370

Query: 281 -----KYEYLCSRYTLGRDLPAMTESTEQNLCMKCNEGGKLMVCKTTTCQLMMHKNCLGA 335
                K E+L S++  G+DLPAMTES  QNLC KCNE G+L+VC  TTC LM+HKNCLG 
Sbjct: 371 DLTAIKAEFLSSQHASGQDLPAMTESRGQNLCSKCNEAGQLLVC--TTCPLMLHKNCLGD 428

Query: 336 SCQLDANGNVFCPFCAYSHTISEYLEAKKKASLARKELAFF 376
           S QL+A GN  CPFC YSH ISEYLEAKK +S ARKELA F
Sbjct: 429 SAQLEAKGNFLCPFCKYSHAISEYLEAKKISSSARKELAIF 469


>Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351 |
           20130731
          Length = 397

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/249 (44%), Positives = 148/249 (59%), Gaps = 26/249 (10%)

Query: 120 NDSQQTVASDKFQDDISNGCGIEISSDRFVSEGDKNNLMKKKHEENFSDMKRKKGSQLLV 179
           +D       D+F  ++  G       D  V +G+  NL+ K+ ++   D K  KG QLLV
Sbjct: 157 SDEADPFGLDQFLTEVKKG-------DTTVYQGENLNLVVKRRKKESLDKKCNKGGQLLV 209

Query: 180 CEATTVPSVAPQSCLDSTLNVCPQHVSRVESCQTTSMDEIDDTVPVEPIPTIDNNANNIQ 239
            E+T+VP +AP+SC+    N+ PQH S VE  +    DE +D V VEPIPT D NA+ +Q
Sbjct: 210 SESTSVPLLAPESCIGMKTNIYPQHTSGVEPRRNKLTDETNDIVHVEPIPTNDGNADKVQ 269

Query: 240 LMIDESQPEQKEPSVKSLHTSQQPVASNKTVIGTVNGCA------------------AKK 281
            M +ESQP+QKEP+V SL+ SQ+PVA++K ++ TV  C                   AKK
Sbjct: 270 HMNNESQPKQKEPNVASLNGSQKPVANDKALVYTVFDCGAELSSDSDVYYNEKIDLTAKK 329

Query: 282 YEYLCSRYTLGRDLPAMTESTEQNLCMKCNEGGKLMVCKTTTCQLMMHKNCLGASCQLDA 341
            E+L S++  G+DLPAM ES  +NLC KCNE G+L+VCKTTT  LM+H N LG S QL A
Sbjct: 330 DEFLSSQHAFGQDLPAMIESRGRNLCSKCNESGQLLVCKTTTYSLMVHINYLGDSAQL-A 388

Query: 342 NGNVFCPFC 350
             N  CPF 
Sbjct: 389 KENFLCPFL 397


>Medtr3g082160.1 | myb-like DNA-binding domain protein | HC |
           chr3:37085251-37081098 | 20130731
          Length = 353

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 299 TESTEQNLCMKCNE-GGKLMVCKTTTCQLMMHKNCLGASCQLDANGNVFCPFCAYSHTIS 357
            +S + N+C+ CN+ GG+L+VC  T C + +H  C+G+  + D +GN FCP+CAY   + 
Sbjct: 65  VDSLDDNICITCNKLGGELLVCSQTDCPVSVHVTCIGSEPKFDDSGNFFCPYCAYKRALK 124

Query: 358 EYLEAKKKASLARKELAFFISR 379
           +  E ++KA LA+K L+ F+ +
Sbjct: 125 KTRELREKAVLAKKALSSFLEK 146



 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 3/61 (4%)

Query: 590 RRKKIPWTAEEEELIQEGVQKFGCNDQNIPWKKIWAFGSHVFEQDGKRRMPQDLKDKWKN 649
           +RK++ WTAEEE++++EGV KF   DQNIPW+KI  FG  VF+   K R P DLKDKW+ 
Sbjct: 289 KRKRLNWTAEEEKVLKEGVLKFATEDQNIPWRKILEFGCCVFD---KTRTPVDLKDKWRK 345

Query: 650 M 650
           +
Sbjct: 346 I 346