Miyakogusa Predicted Gene

Lj0g3v0323349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0323349.1 Non Characterized Hit- tr|I1MAL1|I1MAL1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,51.52,0.00000000003,seg,NULL,CUFF.21952.1
         (118 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g468960.1 | hypothetical protein | LC | chr8:25002674-2500...    62   1e-10
Medtr8g468940.1 | hypothetical protein | HC | chr8:24998890-2499...    59   1e-09

>Medtr8g468960.1 | hypothetical protein | LC |
           chr8:25002674-25002988 | 20130731
          Length = 104

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 26  RYLRPGALAKLRDSKV--SARRWAHRIXXXXXXXXXXXXXXXXXXFDQLPLNQDNGIPCF 83
           RYL+PGALAKLRDSK   ++R+  ++I                     L    DN +PCF
Sbjct: 18  RYLKPGALAKLRDSKKIKASRKLQNQINLLDLSQLSPTSSPSSPPQQNL----DNVVPCF 73

Query: 84  AVTANRRPSCLARKKLFAVTPFFT 107
             T NR P CLARKKLFAVTP FT
Sbjct: 74  NPTINR-PRCLARKKLFAVTPVFT 96


>Medtr8g468940.1 | hypothetical protein | HC |
           chr8:24998890-24998567 | 20130731
          Length = 107

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 26  RYLRPGALAK-LRDSKV--SARRWAHRIXXXXXXXXXXXXXXXXXXFDQLPLNQDNGIPC 82
           RYL+PGALAK LRDSK   + R+  ++I                    Q   N DN +PC
Sbjct: 19  RYLKPGALAKKLRDSKKIKANRKLQNQINLLELSTTTPISPPSFSPSPQ---NLDNVVPC 75

Query: 83  FAVTANRRPSCLARKKLFAVTPFFT 107
           F  T NR P CLARKKLFAVTP FT
Sbjct: 76  FDPTFNR-PRCLARKKLFAVTPVFT 99