Miyakogusa Predicted Gene

Lj0g3v0322979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0322979.1 Non Characterized Hit- tr|K3Y967|K3Y967_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si010731,83.33,0.000007,seg,NULL; coiled-coil,NULL,CUFF.21923.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079460.1 | hypothetical protein | HC | chr2:33443561-3344...    52   5e-07

>Medtr2g079460.1 | hypothetical protein | HC |
          chr2:33443561-33449037 | 20130731
          Length = 341

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 2/45 (4%)

Query: 5  NGNGALPNKAAASLEKPEGDDAPSRIDSRKARENSDVDSETERKH 49
          NGNGA P K A S EK +G+  PS+ DSRK RENSD+D+ET+RKH
Sbjct: 6  NGNGA-PAKIATSSEKDDGE-PPSKRDSRKTRENSDIDTETDRKH 48