Miyakogusa Predicted Gene

Lj0g3v0321969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0321969.1 Non Characterized Hit- tr|K4D379|K4D379_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,27.97,2e-17,seg,NULL,CUFF.21833.1
         (239 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g057600.1 | hypothetical protein | LC | chr1:25303794-2530...   149   3e-36
Medtr1g057590.1 | hypothetical protein | LC | chr1:25300245-2530...    67   1e-11

>Medtr1g057600.1 | hypothetical protein | LC |
           chr1:25303794-25303123 | 20130731
          Length = 223

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 122/239 (51%), Gaps = 20/239 (8%)

Query: 1   MLDGENVPLAVVYSDGDKETNVGTVAVGPTLGFKRLLSLLSQKVGISPPQFSVFLANNSS 60
           M D    P  VVY+DG+ ETN+G + V PT+  K LLS LS K+GI P QFSVF+A+ +S
Sbjct: 1   MSDCGRKPFPVVYNDGETETNLGIITVYPTMNIKTLLSKLSHKIGILPHQFSVFIADQNS 60

Query: 61  DWKIPLTAKFNFAAVPLXXXXXXXXYYFLVRRAKRYKKS-APSCKNPPENVVLLRREAAA 119
           D KIP T K N  AV          Y F V R   YKK+      N  E  +L  R+   
Sbjct: 61  DRKIPFTTKVNIPAVAC----EDATYAFYVSRCGSYKKALVKKNNNLSEKKMLQCRD--- 113

Query: 120 GDGVGGDNQTPLTALRPTFSAPLILDPAEYVRKVSNLCKERELFLMSMGINGEPVRKEVP 179
                 D   P++A     +  L+ +  E  R++     ERE FLM MG   E  R E P
Sbjct: 114 ------DGSRPVSA-----AEALVFERGEMERRMLKFKMEREAFLMRMGNKVESFRVEPP 162

Query: 180 NXXXXXXXXXXAV-CRQCLKAMRKGIKASFHLCVNDEVVTAFRTTAGPISRPVKNSGED 237
                       V C++C+ A     KA FHLC+ DEV+  F+T+ GPI RPV+NS ED
Sbjct: 163 MDNGGGSRGGSGVYCKECVMAEVIRTKADFHLCIRDEVIIGFKTSVGPICRPVRNSDED 221


>Medtr1g057590.1 | hypothetical protein | LC |
           chr1:25300245-25300036 | 20130731
          Length = 69

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 193 CRQCLKAMRKGIKASFHLCVNDEVVTAFRTTAGPISRPVKNSGED 237
           C++C+ A    IKA+FHLCV DEV+  F+T+AGPI RPV+NSGED
Sbjct: 24  CKECVIAEVTRIKANFHLCVRDEVIIGFKTSAGPIFRPVRNSGED 68