Miyakogusa Predicted Gene

Lj0g3v0321829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0321829.1 Non Characterized Hit- tr|J3L9B6|J3L9B6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G1,44.68,5e-19,seg,NULL,CUFF.21820.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g076860.1 | DUF2351 family protein | HC | chr8:32612031-32...    70   6e-13

>Medtr8g076860.1 | DUF2351 family protein | HC |
           chr8:32612031-32607722 | 20130731
          Length = 557

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 68  PIPARVLLDADAPPTFRALSDHIEVKXXXXXXXXX-XXXXXXXXQPSSRPLSMDSDVENL 126
           PIP  VLLDAD PPT R+ +DHIEVK                   P  +P SMD DV+ L
Sbjct: 71  PIP-NVLLDADFPPTVRSFTDHIEVKLLLLLPVDHPVLSALHQTSPLPQPFSMDYDVDKL 129

Query: 127 SSHGEVDFYCRTCAFKLTK 145
           SS GEV+F CR+C + LTK
Sbjct: 130 SSAGEVEFVCRSCHYGLTK 148