Miyakogusa Predicted Gene

Lj0g3v0321439.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0321439.1 tr|B9INU2|B9INU2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_574572 PE=4
SV=1,32.57,0.00000000002,seg,NULL,CUFF.21792.1
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g089380.1 | transmembrane protein, putative | HC | chr2:37...   169   2e-42
Medtr0048s0220.1 | transmembrane protein, putative | LC | scaffo...    83   3e-16
Medtr0185s0010.1 | transmembrane protein, putative | LC | scaffo...    70   2e-12
Medtr0048s0140.1 | hypothetical protein | LC | scaffold0048:5984...    55   9e-08

>Medtr2g089380.1 | transmembrane protein, putative | HC |
           chr2:37768309-37769290 | 20130731
          Length = 231

 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 129/208 (62%), Gaps = 24/208 (11%)

Query: 1   MKSVSKNKFLTCFRPVVDIDAMTMLDSGPALDRSATRHITDKHDTRNSSTKSIFSD---P 57
           MKSVSKNKFLTCFRPV+D+D M   ++ PA   S +R    KH T+NS+T S+  D   P
Sbjct: 1   MKSVSKNKFLTCFRPVIDLDDMLESETVPA--PSTSRR---KHATQNSATNSMSLDQNSP 55

Query: 58  KSVEDRVVRQPSKRAFAKVIKAVVFETILNTRARNKKLYSQSCFGSRRSYSAHADSSSTG 117
           KS++++V   P K+  +KVIKAV+F+ ILNTRA  K LYSQ+CFGS+R+YS H  SSS  
Sbjct: 56  KSIQNQVAGHPPKQTLSKVIKAVMFQIILNTRANKKNLYSQTCFGSKRNYSLHTRSSS-- 113

Query: 118 NGKSTMSLVSLDSNIKEIKTMEXXXXXXXXXXXRV----SEDESCEDQLEKQNKCLLQGI 173
                    S  +NI+EIK +E            V    S  +S E Q E Q K    GI
Sbjct: 114 ---------SFKTNIEEIKAIESPLSSPSSSYSPVFNSKSLSKSNESQFENQKKFHCLGI 164

Query: 174 CMI-LISLAVTVLWGKIDVIILTSMLFC 200
            M+ LISL VTV WGK++VI+LTSM FC
Sbjct: 165 YMVFLISLVVTVCWGKVNVIVLTSMFFC 192


>Medtr0048s0220.1 | transmembrane protein, putative | LC |
           scaffold0048:86016-84800 | 20130731
          Length = 197

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 100/209 (47%), Gaps = 50/209 (23%)

Query: 1   MKSVSKNKFLTCFRPVVDIDAMTMLDSGPALDRSATRHITDKHDTRNSSTKSIFSDPKSV 60
           M+S SK+KF  CFRPVVD+D +        L+     H    H ++N             
Sbjct: 1   MRSFSKSKFSQCFRPVVDLDDL--------LESKVVAH----HHSKN------------- 35

Query: 61  EDRVVRQPSKRAFAKVIKAVVFETILNTRARNKKLYSQSCFG-SRRSYSAHADSSSTGNG 119
                    K    KVIKA+V ETILN RAR+K  Y   CFG S+ +YS +   ++    
Sbjct: 36  ---------KHTVLKVIKAMVLETILNRRARHKTCYGFDCFGVSKHNYSTYKKVTN-ATQ 85

Query: 120 KSTMSLVSLDSNIKEIKTMEXXXXXXXXXXXRVSEDESCEDQ--LEKQNKCLLQGICMIL 177
            S  SL S +S + + K M               E E+ ++   LEKQ K   + IC++L
Sbjct: 86  SSLTSLSSDNSTVSQSKNMSTKGK---------HEKETKQESAILEKQKKFEFRAICLVL 136

Query: 178 ISLAVTVLWGKIDVIILTSM---LFCICS 203
           ISL  TV +GK+  I LTS+   LF +C+
Sbjct: 137 ISLVFTVFFGKLFGIFLTSIWIFLFSLCN 165


>Medtr0185s0010.1 | transmembrane protein, putative | LC |
           scaffold0185:6442-7689 | 20130731
          Length = 189

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 92/209 (44%), Gaps = 50/209 (23%)

Query: 1   MKSVSKNKFLTCFRPVVDIDAMTMLDSGPALDRSATRHITDKHDTRNSSTKSIFSDPKSV 60
           M+S SK+KF  CFRPVVD+D +        L+     H    H ++N             
Sbjct: 1   MRSFSKSKFSQCFRPVVDLDDL--------LESKVVAH----HHSKN------------- 35

Query: 61  EDRVVRQPSKRAFAKVIKAVVFETILNTRARNKKLYSQSCFG-SRRSYSAHADSSSTGNG 119
                    K    KVIKA+V ETILN RAR+K  Y    FG S+ +YS +   +     
Sbjct: 36  ---------KHTVLKVIKAMVLETILNRRARHKTCYGFDFFGVSKHNYSTYKKVTK-ATQ 85

Query: 120 KSTMSLVSLDSNIKEIKTMEXXXXXXXXXXXRVSEDESCEDQ--LEKQNKCLLQGICMIL 177
            S  +L S    + + K M               E E+      LEKQ K     + ++L
Sbjct: 86  SSLTTLSSDSPKLSQPKKMSTKGK---------HEKETSRGSAILEKQKKFEFYAMWLVL 136

Query: 178 ISLAVTVLWGKIDVIILTSM---LFCICS 203
           ISL  TV +GK+  I LTS+   LF +C+
Sbjct: 137 ISLVFTVCFGKLFGIFLTSIWIFLFSLCN 165


>Medtr0048s0140.1 | hypothetical protein | LC |
           scaffold0048:59843-60436 | 20130731
          Length = 121

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 35/111 (31%)

Query: 1   MKSVSKNKFLTCFRPVVDIDAMTMLDSGPALDRSATRHITDKHDTRNSSTKSIFSDPKSV 60
           M+S SK+K   CFRPVVD+D +        L+     H    H ++N             
Sbjct: 1   MRSFSKSKLSQCFRPVVDLDDI--------LESKVVAH----HHSKN------------- 35

Query: 61  EDRVVRQPSKRAFAKVIKAVVFETILNTRARNKKLYSQSCFG-SRRSYSAH 110
                    K    KVIKA+V ET+LN RAR+K  Y   CFG S+  YS +
Sbjct: 36  ---------KHTVLKVIKAMVLETLLNRRARHKTCYGFDCFGVSKNIYSTY 77