Miyakogusa Predicted Gene

Lj0g3v0320789.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0320789.1 tr|G7L8P4|G7L8P4_MEDTR Exosome complex
exonuclease OS=Medicago truncatula GN=MTR_8g073170 PE=3
SV=1,91.26,0,RIBONUCLEASE_II,Ribonuclease II/R, conserved site;
MITOTIC CONTROL PROTEIN DIS3,NULL; RIBONUCLEASE,N,CUFF.21741.1
         (366 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g073170.1 | exosome complex exonuclease RRP44 | HC | chr8:...   712   0.0  
Medtr5g058810.1 | ribonuclease II family protein | HC | chr5:242...   150   2e-36
Medtr5g059080.1 | ribonuclease II family protein | HC | chr5:243...   150   3e-36

>Medtr8g073170.1 | exosome complex exonuclease RRP44 | HC |
           chr8:30968594-30949877 | 20130731
          Length = 934

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/366 (91%), Positives = 358/366 (97%)

Query: 1   MTPEADIISSRYTKSVIKSCAALSYVEAQARMDDSRLMDPVTTDLRNMNSLAKKMRLRRI 60
           MTPEADIIS+RYTKSVIKS AALSYVEAQARMDDSRLMDPVTTDLRNMNSLAKKMRLRRI
Sbjct: 569 MTPEADIISTRYTKSVIKSAAALSYVEAQARMDDSRLMDPVTTDLRNMNSLAKKMRLRRI 628

Query: 61  DNGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILRSFPLC 120
           +NGALTLASAEVKFQIDTETH+PLDIG+YQI+EANQMVEEFMLAANVSVAQQIL+SFPLC
Sbjct: 629 ENGALTLASAEVKFQIDTETHNPLDIGIYQIKEANQMVEEFMLAANVSVAQQILKSFPLC 688

Query: 121 SLLRRHPIPTREMLEPFLRIATAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRIMATR 180
           SLLRRHP PT+EMLEP LR++ A+GL+LDVSSSKALADSLDHAVGDDPYFNKLIRI+ TR
Sbjct: 689 SLLRRHPTPTKEMLEPLLRVSAAIGLNLDVSSSKALADSLDHAVGDDPYFNKLIRILTTR 748

Query: 181 CMTQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVF 240
           CM+QAVYFCSGDLSPPEYHHYGLA PLYTHFTSPIRRYADVIVHRLLAAS+GISKLPSVF
Sbjct: 749 CMSQAVYFCSGDLSPPEYHHYGLATPLYTHFTSPIRRYADVIVHRLLAASIGISKLPSVF 808

Query: 241 QDRLQLTSIADNLNYRHRNAQMAGRASIELHTLIYFRKRPTDTEARIVKIRSNGFFVFVP 300
           QDRLQLTSIADNLNYRHRNAQMAGRAS+EL+TLIYFR RPTDTEAR+VKIRSNGFFVFVP
Sbjct: 809 QDRLQLTSIADNLNYRHRNAQMAGRASVELNTLIYFRTRPTDTEARVVKIRSNGFFVFVP 868

Query: 301 KYGIEGPVYLTTRAEKGNGDWYVDEQEQKIKKMDGSVSYSILQSVQIHMEVVEPQPNRPK 360
           K+GIEGPVYLTTRAEKG+G+WYVDEQEQKIKKMDGS SYSILQ+VQIH+EVVEPQPNRPK
Sbjct: 869 KFGIEGPVYLTTRAEKGSGEWYVDEQEQKIKKMDGSFSYSILQTVQIHLEVVEPQPNRPK 928

Query: 361 LQLTLI 366
           LQLTLI
Sbjct: 929 LQLTLI 934


>Medtr5g058810.1 | ribonuclease II family protein | HC |
           chr5:24281512-24288073 | 20130731
          Length = 855

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 134/251 (53%), Gaps = 25/251 (9%)

Query: 5   ADIISSRYTKSVIKSCAALSYVEAQARMDDS------------------RLMDP-VTTDL 45
            D++     ++VI+SC  LSY  AQ  +D +                  R   P V T L
Sbjct: 576 GDVVDRWIGRTVIQSCCKLSYEHAQDIIDGAFNFESSSFHEDGYPKLHGRFGWPDVITSL 635

Query: 46  RNMNSLAKKMRLRRIDNGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 105
           +++  ++  ++ +R   GAL L   ++    D E   P +    + +E+N ++EE+ML A
Sbjct: 636 KSLYEISNVLKHKRFAGGALRLDKPKIVILSD-ENGIPYNSTFSEQKESNLLIEEYMLLA 694

Query: 106 NVSVAQQILRSFPLCSLLRRHPIPTREMLEPFLRIATAVGLHLDVSSSKALADSLDH--- 162
           N + A+ I R++P  +LLRRHP P    L  F       GL+LD SSS  +  SL+    
Sbjct: 695 NTTAAEIICRAYPDVALLRRHPEPNMRKLREFTAFCQKHGLNLDTSSSGHIRSSLEQMKE 754

Query: 163 AVGDDPYFNKLIRIMATRCMTQAVYFCSGDL--SPPEYHHYGLAAPLYTHFTSPIRRYAD 220
            + DDP    ++   A++ M  A YFCS DL  +  E+ HY LA PLYTHFTSP+RRYAD
Sbjct: 755 KLKDDPVLYDILISYASKLMQSASYFCSSDLKDNEHEWGHYALAVPLYTHFTSPLRRYAD 814

Query: 221 VIVHRLLAASL 231
           ++VHR L A++
Sbjct: 815 IVVHRTLLATI 825


>Medtr5g059080.1 | ribonuclease II family protein | HC |
           chr5:24380512-24374112 | 20130731
          Length = 1107

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 134/251 (53%), Gaps = 25/251 (9%)

Query: 5   ADIISSRYTKSVIKSCAALSYVEAQARMDDS------------------RLMDP-VTTDL 45
            D++     ++VI+SC  LSY  AQ  +D +                  R   P V T L
Sbjct: 611 GDVVDRWIGRTVIQSCCKLSYEHAQDIIDGAFNFESSSFHEDGYPKLHGRFGWPDVITSL 670

Query: 46  RNMNSLAKKMRLRRIDNGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 105
           +++  ++  ++ +R   GAL L   ++    D E   P +    + +E+N ++EE+ML A
Sbjct: 671 KSLYEISNVLKHKRFAGGALRLDKPKIVILSD-ENGIPYNSTFSEQKESNLLIEEYMLLA 729

Query: 106 NVSVAQQILRSFPLCSLLRRHPIPTREMLEPFLRIATAVGLHLDVSSSKALADSLDH--- 162
           N + A+ I R++P  +LLRRHP P    L  F       GL+LD SSS  +  SL+    
Sbjct: 730 NTTAAEIICRAYPDVALLRRHPEPNMRKLREFTAFCQKHGLNLDTSSSGHIRSSLEQMKE 789

Query: 163 AVGDDPYFNKLIRIMATRCMTQAVYFCSGDL--SPPEYHHYGLAAPLYTHFTSPIRRYAD 220
            + DDP    ++   A++ M  A YFCS DL  +  E+ HY LA PLYTHFTSP+RRYAD
Sbjct: 790 KLKDDPVLYDILISYASKLMQSASYFCSSDLKDNEHEWGHYALAVPLYTHFTSPLRRYAD 849

Query: 221 VIVHRLLAASL 231
           ++VHR L A++
Sbjct: 850 IVVHRTLLATI 860