Miyakogusa Predicted Gene

Lj0g3v0320179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0320179.1 Non Characterized Hit- tr|I3S7E3|I3S7E3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.05,0,COP9
SIGNALOSOME COMPLEX SUBUNIT 6,NULL; EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT F-RELATE,CUFF.21698.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g009270.1 | COP9 signalosome complex subunit 6a | HC | chr...   593   e-169
Medtr5g081980.1 | 26S proteasome regulatory particle non-ATPase ...    90   3e-18
Medtr3g070180.1 | 26S proteasome regulatory particle non-ATPase ...    88   1e-17
Medtr5g082000.1 | eukaryotic translation initiation factor 3 sub...    63   4e-10
Medtr3g070190.1 | eukaryotic translation initiation factor 3 sub...    53   4e-07

>Medtr3g009270.1 | COP9 signalosome complex subunit 6a | HC |
           chr3:1917695-1909047 | 20130731
          Length = 318

 Score =  593 bits (1528), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 287/318 (90%), Positives = 299/318 (94%), Gaps = 1/318 (0%)

Query: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPP-RVY 59
           MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHN+  +NG DGVVSS+PP RV+
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNNATNNGGDGVVSSLPPPRVF 60

Query: 60  GCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDA 119
           GCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDA
Sbjct: 61  GCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDA 120

Query: 120 EESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYT 179
           EESDM+IH+ALMDINESPVYVLLNP+INHSQKDLPVSIFESELHVIDGIPQLIFVRSSYT
Sbjct: 121 EESDMHIHKALMDINESPVYVLLNPAINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYT 180

Query: 180 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKG 239
           IETVEAERISVDHVAHLKPSDGGSAATQLAA+LTGIHSAIKMLHSRIKVLHHYLLAM+KG
Sbjct: 181 IETVEAERISVDHVAHLKPSDGGSAATQLAANLTGIHSAIKMLHSRIKVLHHYLLAMEKG 240

Query: 240 DVPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDK 299
           DVPCEN             PAIESGKFQDDFLM YNDTLLISYL MLTNCSSAMN+LVDK
Sbjct: 241 DVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDK 300

Query: 300 FNTAYDRHSRRGGRTAFM 317
           F+TAYDRH+RRGGRTAFM
Sbjct: 301 FSTAYDRHTRRGGRTAFM 318


>Medtr5g081980.1 | 26S proteasome regulatory particle non-ATPase
           subunit 8 | HC | chr5:35180311-35175443 | 20130731
          Length = 310

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 39/305 (12%)

Query: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIGVQKGRTVE 72
           +HPLV+++I D+Y RV                            RV G ++G     TV+
Sbjct: 19  VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVD 56

Query: 73  IFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIH 127
           I NS+ + +     DPS   LD  + E    ++K++    +++GWYSTG    E+D++IH
Sbjct: 57  ITNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIH 116

Query: 128 RALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIP---QLIFVRSSYTIETVE 184
               D   +PV V+++  +   +  +P   + +   V +      Q +FV     I   E
Sbjct: 117 ALFNDYVPNPVLVIID--VEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHE 174

Query: 185 AERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPC 243
            E I V+H+   +K +   + AT+++A LT    A+K L +R+K +  YL  +  G +P 
Sbjct: 175 VEEIGVEHLLRDVKDTTISTLATEVSAKLT----ALKGLDARLKEIRSYLDLVIDGKLPL 230

Query: 244 ENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDK--FN 301
            +             P +        F +  ND +L+ YL+ L     A++ L++    N
Sbjct: 231 NHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDQMLVIYLSSLIRSVIALHNLINNKMLN 290

Query: 302 TAYDR 306
             ++R
Sbjct: 291 KEHER 295


>Medtr3g070180.1 | 26S proteasome regulatory particle non-ATPase
           subunit 8 | HC | chr3:31447973-31442165 | 20130731
          Length = 309

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 37/313 (11%)

Query: 4   SSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVI 63
           SS S     +HPLV+++I D+Y RV                            RV G ++
Sbjct: 10  SSRSIEKVVVHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLL 47

Query: 64  GVQKGRTVEIFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSD 118
           G     TV++ NS+ + +     DPS   LD  + E    ++K++    +++GWYSTG  
Sbjct: 48  GSTFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHEAMFSMFKRINAKEHVVGWYSTGPK 107

Query: 119 AEESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIP---QLIFVR 175
             E+D++IH    D   +PV V+++  +   +  +P   + +   V +      Q +FV 
Sbjct: 108 LRENDLDIHGLFNDYVPNPVLVIID--VEPKELGIPTKAYYAVEEVKENATQKSQKVFVH 165

Query: 176 SSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLA 235
               I   E E I V+H+  L+     + +T LA  ++G  +A+K L +R+K +  YL  
Sbjct: 166 VQSEIAAHEVEEIGVEHL--LRDVKDTTIST-LATEVSGKLTALKGLDARLKEIRGYLDL 222

Query: 236 MQKGDVPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNE 295
           +  G +P  +             P +        F +  ND +L+ YL+ L     A++ 
Sbjct: 223 VIDGKLPLNHEILYHLQDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHN 282

Query: 296 LVDK--FNTAYDR 306
           L++    N  ++R
Sbjct: 283 LINNKMLNKEHER 295


>Medtr5g082000.1 | eukaryotic translation initiation factor 3
           subunit F | HC | chr5:35199821-35195812 | 20130731
          Length = 284

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 37/303 (12%)

Query: 4   SSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVI 63
           SSS  L+ K+HPLVI NI D Y R   Q                         RV G ++
Sbjct: 12  SSSQTLSGKVHPLVIFNICDCYVRRPDQAE-----------------------RVIGTLL 48

Query: 64  G-VQKGRTVEIFNSFELLYDPSTH--SLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAE 120
           G V    TV+I NS+ + ++ S    +LD  +       ++KV P   I+GWYSTG    
Sbjct: 49  GSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNPKEVIVGWYSTGLGVT 108

Query: 121 ESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTI 180
                IH        +P+++ ++      +  +   +  + L + D      F      +
Sbjct: 109 GGSALIHEFYSREVSNPIHLTVDTGFADGEGAIKAYV-SNNLSLGDQQIAAQFQEIPLDL 167

Query: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGD 240
             VEAERI  D++         ++  ++ + L G+ +++  L + +   + Y+  + +G 
Sbjct: 168 RMVEAERIGFDNLK-------STSVDKIPSDLEGMEASMTHLLALVDDTYKYVDDVVEGR 220

Query: 241 VPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDKF 300
           V  +N             P I S  F         D LL+ YL+ +T     + E   K 
Sbjct: 221 VDPDNKIGKCISDVVGSLPKIPSLAFDKLVNDSLQDHLLMVYLSSITRTQLGLAE---KL 277

Query: 301 NTA 303
           NTA
Sbjct: 278 NTA 280


>Medtr3g070190.1 | eukaryotic translation initiation factor 3
           subunit F | HC | chr3:31455221-31449668 | 20130731
          Length = 288

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 123/318 (38%), Gaps = 49/318 (15%)

Query: 1   MASSSSSGLTF------------KLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGAD 48
           MAS++ + L F            K+HPLV+ NI D Y R   Q                 
Sbjct: 1   MASTNRTVLQFSSSSSSSQSLSAKVHPLVVFNICDCYVRRPDQAE--------------- 45

Query: 49  GVVSSVPPRVYGCVIG-VQKGRTVEIFNSFELLYDPSTH--SLDRPFLEKKQELYKKVFP 105
                   RV G ++G V    TV+I NS+ + ++ S    +LD  +       ++KV  
Sbjct: 46  --------RVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNQ 97

Query: 106 HFYILGWYSTGSDAEESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVI 165
              I+GWYSTG         IH        +P+++ ++         +   +  + L + 
Sbjct: 98  KEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTAGGGTIKAYV-SNNLSLG 156

Query: 166 DGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSR 225
           D      F      +  VEAERI  D +         +   ++ + L G+ ++++ L + 
Sbjct: 157 DRQIAAQFQEIPLDLRMVEAERIGFDILK-------ATTVDKIPSDLEGMEASMEHLLAL 209

Query: 226 IKVLHHYLLAMQKGDVPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTM 285
           I  ++ Y+  + +G V  +N             P +    F         D LL+ YL+ 
Sbjct: 210 INDIYKYVDDVVEGRVAPDNKIGKFISDAVGSLPKLPPSDFDKLVNDSLQDHLLMVYLSS 269

Query: 286 LTNCSSAMNELVDKFNTA 303
           +T    ++ E   K NTA
Sbjct: 270 ITRTQLSLAE---KLNTA 284