Miyakogusa Predicted Gene

Lj0g3v0319629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319629.1 tr|A9SAQ5|A9SAQ5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_163856,53.77,6e-19,UBIQUITIN_2,Ubiquitin supergroup;
Ubiquitin-like,NULL; no description,NULL; Rad60-SLD,Small
ubiquiti,CUFF.21656.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g053520.1 | small ubiquitin-like modifier 3 | HC | chr3:21...   111   2e-25
Medtr3g053540.1 | small ubiquitin-like modifier 3 | HC | chr3:21...   110   3e-25
Medtr8g010480.1 | small ubiquitin-like modifier 3 | LC | chr8:27...    74   3e-14
Medtr8g010490.1 | small ubiquitin-like modifier 3 | LC | chr8:27...    70   3e-13
Medtr3g053640.1 | Myb/SANT-like DNA-binding domain protein | LC ...    54   2e-08
Medtr8g085340.1 | ubiquitin-like Rad60 SUMO-like protein | LC | ...    52   1e-07
Medtr8g085320.1 | ubiquitin-like Rad60 SUMO-like protein | HC | ...    48   2e-06
Medtr0007s0030.1 | ubiquitin-like Rad60 SUMO-like protein | LC |...    47   3e-06

>Medtr3g053520.1 | small ubiquitin-like modifier 3 | HC |
           chr3:21271713-21269094 | 20130731
          Length = 101

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 8/106 (7%)

Query: 1   MSAASASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLY 60
           MS+ +A+      + +++KKP    G +HIN+KV G Q+  E  FRIKRN QL+ LMN Y
Sbjct: 1   MSSGAAA-----PNNEEDKKPEA--GGAHINLKVKG-QDGNEVFFRIKRNTQLKKLMNAY 52

Query: 61  CDHYSQDFNSIAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGG 106
           CD  S DFNSIAFL++G  + A QTPDEL+MED DEIDAM HQ GG
Sbjct: 53  CDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98


>Medtr3g053540.1 | small ubiquitin-like modifier 3 | HC |
           chr3:21293436-21291225 | 20130731
          Length = 101

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 8/106 (7%)

Query: 1   MSAASASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLY 60
           MS+ +A+      + +++KKP    G +HIN+KV G Q+  E  FRIKRN QL+ LMN Y
Sbjct: 1   MSSGAAA-----PNTEEDKKPEA--GGAHINLKVKG-QDGNEVFFRIKRNTQLKKLMNAY 52

Query: 61  CDHYSQDFNSIAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGG 106
           CD  S DFN+IAFL++G  + A QTPDEL+MED DEIDAM HQ GG
Sbjct: 53  CDRQSVDFNAIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98


>Medtr8g010480.1 | small ubiquitin-like modifier 3 | LC |
           chr8:2725287-2721462 | 20130731
          Length = 319

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 27  SSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEGNLVSAYQTP 86
           S  IN+KV G Q   EA F I R+ +L+ LM++YC  Y  DF+ +AFL+ G LV + QTP
Sbjct: 241 SRRINLKVKG-QVGFEASFGINRSTRLKKLMDVYCCRYCFDFDGVAFLFNGCLVESEQTP 299

Query: 87  DELKMEDEDEIDAM 100
           DEL ME+ DE+ AM
Sbjct: 300 DELGMENGDEMLAM 313



 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 16  DQEKKPATNQGSSHINIKVN-GVQEK--IEARFRIKRNVQLRTLMNLYCDHYSQDFNSIA 72
           D E    +   S+HI + ++  +++K  IE  F I R+  L+ LM+ Y   +  D N +A
Sbjct: 72  DDEMDTISYDQSAHIKLNLDLNIKDKDGIEVYFNISRSTPLKKLMDFYGYRHCLDINGVA 131

Query: 73  FLYEGNLVSAYQTPDELKMEDEDEIDAM 100
           FL+ G LV+A QTPDEL+M D DEID +
Sbjct: 132 FLFNGRLVTAEQTPDELQMMDGDEIDVV 159



 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%)

Query: 37  VQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEGNLVSAYQTPDELKMEDEDE 96
            Q+  E  F I ++  L+ LMN YC+H+S DFNSI F++  + V A Q+P+E++M D DE
Sbjct: 173 CQDGNEIFFSINKSTHLKKLMNAYCNHHSVDFNSIGFMFNEHHVQAEQSPNEMQMVDGDE 232

Query: 97  IDAMSH 102
           IDA+ +
Sbjct: 233 IDAIFY 238


>Medtr8g010490.1 | small ubiquitin-like modifier 3 | LC |
           chr8:2738631-2736144 | 20130731
          Length = 188

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 25  QGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEGNLVSAYQ 84
           Q +++IN+ V    + I+  FR+K+  Q+R LM+ YCD  + DF  + FL+ G  +  +Q
Sbjct: 24  QPTNYINLHVKDTDD-IKLYFRLKKTTQMRKLMDSYCDRNALDFYLMVFLFNGRRIYPHQ 82

Query: 85  TPDELKMEDEDEIDAMSHQ 103
           TP EL +ED+D IDA+ HQ
Sbjct: 83  TPYELDLEDDDAIDAVLHQ 101



 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 30  INIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEGNLVSAYQTPDEL 89
           INIKV G Q+  +A FRI+++  L+ LM+ YC  Y  D N +  L+ G LV   QTP EL
Sbjct: 108 INIKVKG-QDGFQASFRIRKSAALKKLMDQYCYQYCLDVNGVGLLFNGYLVQPEQTPFEL 166

Query: 90  KMEDEDEIDAMSHQMGG 106
            +ED DE+ AM H   G
Sbjct: 167 GIEDGDEMLAMLHLRTG 183


>Medtr3g053640.1 | Myb/SANT-like DNA-binding domain protein | LC |
           chr3:21330948-21326800 | 20130731
          Length = 433

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 30  INIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEGNLVSAYQTPDEL 89
           I + V G Q+  EA F +    +L  LM+ YC  Y  D   + FL+ G L+ A QTP EL
Sbjct: 85  IVLNVKG-QDGYEASFTMDECSRLEKLMDFYCRRYCLDITEVVFLFNGRLIRADQTPAEL 143

Query: 90  KMEDEDEIDAMSH 102
            M  +DEI  +S+
Sbjct: 144 HMRYDDEIYVVSY 156


>Medtr8g085340.1 | ubiquitin-like Rad60 SUMO-like protein | LC |
           chr8:35354791-35353457 | 20130731
          Length = 131

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 5   SASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHY 64
           +++G  G++ +  E+   T  G  HI   + G Q+  E  F++ ++  L T    YC   
Sbjct: 2   ASNGILGNKRKASERDEVTEDGIVHIEFGIRG-QDGNEQHFKVNQDKFLITAFQQYCKKM 60

Query: 65  SQDFNSIAFLY-EGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
              + +I FL  E ++    QTP  L +++ D IDAM HQ GGG
Sbjct: 61  KLQYATINFLLDEKSIQGNRQTPKMLNLKNGDTIDAMKHQSGGG 104


>Medtr8g085320.1 | ubiquitin-like Rad60 SUMO-like protein | HC |
           chr8:35344880-35341163 | 20130731
          Length = 104

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 5   SASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHY 64
           +++G+R + ++D+     ++  S  IN  +   Q+     F++  +  L+     YC   
Sbjct: 2   ASNGKRKASERDE----ISSDDSVRINFSIRA-QDGSRVFFKVNPDRYLKIPFKKYCQKS 56

Query: 65  SQDFNSIAFLYEGNLVSA-YQTPDELKMEDEDEIDAMSHQMGGG 107
           + ++ ++ FL EG  ++   QTP  LK+++  EID M  Q GGG
Sbjct: 57  NLEYETVTFLLEGKRINGNRQTPRTLKLKNGAEIDVMKQQTGGG 100


>Medtr0007s0030.1 | ubiquitin-like Rad60 SUMO-like protein | LC |
          scaffold0007:9998-11329 | 20130731
          Length = 53

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 56 LMNLYCDHYSQDFNSIAFLYEGNLVSAYQTPDEL 89
          +MNLYCD  S DFNS+ FL++G  +   QTPDE+
Sbjct: 1  MMNLYCDRTSVDFNSVVFLFDGRKIRDEQTPDEV 34