Miyakogusa Predicted Gene

Lj0g3v0319359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319359.1 Non Characterized Hit- tr|K3XLM0|K3XLM0_SETIT
Uncharacterized protein OS=Setaria italica GN=Si002793,32.35,3e-19,no
description,Trigger factor, ribosome-binding, bacterial;
Trigger_N,Trigger factor, ribosome-bindi,CUFF.21642.1
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g009150.1 | bacterial trigger factor protein | HC | chr3:1...   243   1e-64
Medtr3g009150.2 | bacterial trigger factor protein | HC | chr3:1...   243   1e-64
Medtr3g009150.3 | bacterial trigger factor protein | HC | chr3:1...   157   8e-39
Medtr4g068280.1 | trigger factor-like protein, putative | HC | c...    82   3e-16

>Medtr3g009150.1 | bacterial trigger factor protein | HC |
           chr3:1809099-1813565 | 20130731
          Length = 204

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 150/204 (73%), Gaps = 2/204 (0%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQA-YLP- 58
           M T+SQ FILN TPQM R +QRV++ +  S N   F  S K RH A +ILKREQ+  LP 
Sbjct: 1   MHTLSQSFILNLTPQMIRHRQRVEDFVSCSSNSSHFCHSLKHRHSAMRILKREQSRCLPT 60

Query: 59  AAVISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A+V+SD  +SS  FE+FSVS  D +DV E+KISIEVSGN+TQ  FDDVF+KMV AAQPIP
Sbjct: 61  ASVLSDTEISSARFEEFSVSTVDTDDVGEIKISIEVSGNRTQRTFDDVFQKMVEAAQPIP 120

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQR 178
           GFRRVKGGKTP+IPK+ILLEVLGPS V+K+VIK+IINSTVAEYVEKESL V +DLRVEQ 
Sbjct: 121 GFRRVKGGKTPNIPKDILLEVLGPSNVFKQVIKEIINSTVAEYVEKESLKVSSDLRVEQS 180

Query: 179 XXXXXXXXXXXXXXXXDVVLHPQK 202
                           D+VL  QK
Sbjct: 181 FEDLETTFEAGEKFSFDIVLQLQK 204


>Medtr3g009150.2 | bacterial trigger factor protein | HC |
           chr3:1809024-1813565 | 20130731
          Length = 204

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 150/204 (73%), Gaps = 2/204 (0%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQA-YLP- 58
           M T+SQ FILN TPQM R +QRV++ +  S N   F  S K RH A +ILKREQ+  LP 
Sbjct: 1   MHTLSQSFILNLTPQMIRHRQRVEDFVSCSSNSSHFCHSLKHRHSAMRILKREQSRCLPT 60

Query: 59  AAVISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A+V+SD  +SS  FE+FSVS  D +DV E+KISIEVSGN+TQ  FDDVF+KMV AAQPIP
Sbjct: 61  ASVLSDTEISSARFEEFSVSTVDTDDVGEIKISIEVSGNRTQRTFDDVFQKMVEAAQPIP 120

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQR 178
           GFRRVKGGKTP+IPK+ILLEVLGPS V+K+VIK+IINSTVAEYVEKESL V +DLRVEQ 
Sbjct: 121 GFRRVKGGKTPNIPKDILLEVLGPSNVFKQVIKEIINSTVAEYVEKESLKVSSDLRVEQS 180

Query: 179 XXXXXXXXXXXXXXXXDVVLHPQK 202
                           D+VL  QK
Sbjct: 181 FEDLETTFEAGEKFSFDIVLQLQK 204


>Medtr3g009150.3 | bacterial trigger factor protein | HC |
           chr3:1809076-1814257 | 20130731
          Length = 169

 Score =  157 bits (396), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 9/152 (5%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQA-YLP- 58
           M T+SQ FILN TPQM R +QRV++ +  S N   F  S K RH A +ILKREQ+  LP 
Sbjct: 1   MHTLSQSFILNLTPQMIRHRQRVEDFVSCSSNSSHFCHSLKHRHSAMRILKREQSRCLPT 60

Query: 59  AAVISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A+V+SD  +SS  FE+FSVS  D +DV E+KISIEVSGN+TQ  FDDVF+KMV AAQPIP
Sbjct: 61  ASVLSDTEISSARFEEFSVSTVDTDDVGEIKISIEVSGNRTQRTFDDVFQKMVEAAQPIP 120

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVI 150
           GFRRVKGG       E+ + +L    ++  +I
Sbjct: 121 GFRRVKGG-------EVFMWILNWHGLFIRLI 145


>Medtr4g068280.1 | trigger factor-like protein, putative | HC |
           chr4:25601552-25604786 | 20130731
          Length = 218

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 6/115 (5%)

Query: 59  AAVISDARVSSTDFEDFSVSVADNNDVRE------LKISIEVSGNKTQSIFDDVFRKMVA 112
           +AV S    S TD  D S  + D   V E      +++ ++++G +TQ +FD +   +  
Sbjct: 64  SAVNSGLEASITDSNDISAFLTDATVVAEPGDDNRIQLRVDLTGVQTQKVFDRILINLGR 123

Query: 113 AAQPIPGFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESL 167
            A P+PGFR  KGGK+  IPK+ LL++LG  +V K  I++I+N T+A+Y +KE+L
Sbjct: 124 TAPPVPGFRMQKGGKSSKIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKKENL 178