Miyakogusa Predicted Gene

Lj0g3v0319339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319339.1 CUFF.21631.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g009180.1 | vacuolar protein sorting-associated protein VP...   481   e-136
Medtr3g073360.1 | vacuolar protein sorting-associated protein VP...   255   4e-68

>Medtr3g009180.1 | vacuolar protein sorting-associated protein VPS9
           | HC | chr3:1829947-1834344 | 20130731
          Length = 391

 Score =  481 bits (1238), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/305 (78%), Positives = 267/305 (87%), Gaps = 1/305 (0%)

Query: 1   MEGLEKYILTKLFARTFAASPEDAKIDNEISEKICLLQTFLKPEHLDIPPILRNEASWLL 60
           MEGLEKYI+TKLF+RTFAASPEDAKID+EISEKI LLQTFLKPEHLDIPP+L NEASWLL
Sbjct: 82  MEGLEKYIMTKLFSRTFAASPEDAKIDHEISEKISLLQTFLKPEHLDIPPVLHNEASWLL 141

Query: 61  AEKELQKINAFKAPQEKLLSIMNCCRVINNLLLNAAMSEHVPAGADDFLPVLIYVTIKAN 120
           AEKELQKINAFKAPQEKL +IMNCCRVINNLLLNAAMSE+VPAGADDF+PVLIYVTIKAN
Sbjct: 142 AEKELQKINAFKAPQEKLSTIMNCCRVINNLLLNAAMSEYVPAGADDFIPVLIYVTIKAN 201

Query: 121 PPMLHSNLKFIKLYRRQAKLISEAEYYFTNLVSAKTFIADLNAKSLTMDEIIFEESMQAA 180
           PPMLHSNLKFIKLYRRQ KLISEAEYYFTNLVSAKTFI +LN+KSL++DEI FEE MQAA
Sbjct: 202 PPMLHSNLKFIKLYRRQTKLISEAEYYFTNLVSAKTFIIELNSKSLSIDEIKFEECMQAA 261

Query: 181 RLTSRVSSVKPSTCQASQQGKNDGSFSKKMHLKRDDTGVFQVLQHETNYPYTEAKGEELA 240
           +L  +V+S   S CQ  Q+ KN+ + S KMH K  DT  F VLQH TNYPY EA+ ++LA
Sbjct: 262 KLAKKVTSELHSACQIKQEVKNESNVSNKMHNKL-DTREFHVLQHGTNYPYMEAESKDLA 320

Query: 241 VEDVDILLNCYKDLVSNYTILCKAIDCLSVPEKEPLLHHLEMQGAGSLFSQHNKINTNTN 300
           +EDVDILLN YKDLV+ YTI+CKAI+ LS+ EKEPLLH LEMQG GS+ S+ + INTNTN
Sbjct: 321 MEDVDILLNHYKDLVAKYTIICKAINYLSMSEKEPLLHQLEMQGEGSMLSECHGINTNTN 380

Query: 301 DQTIS 305
           D+T S
Sbjct: 381 DRTTS 385


>Medtr3g073360.1 | vacuolar protein sorting-associated protein VPS9
           | HC | chr3:33082097-33077957 | 20130731
          Length = 478

 Score =  255 bits (651), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 137/295 (46%), Positives = 196/295 (66%), Gaps = 31/295 (10%)

Query: 2   EGLEKYILTKLFARTFAASPEDAKIDNEISEKICLLQTFLKPEHLDIPPILRNEASWLLA 61
           EGLEKY++TKLF R FA+ P+D K+D ++SEK+ L+Q F++PE+LDI P  +NE SWLLA
Sbjct: 80  EGLEKYVMTKLFPRVFASVPDDVKLDEQLSEKMALIQQFIRPENLDIKPPFQNETSWLLA 139

Query: 62  EKELQKINAFKAPQEKLLSIMNCCRVINNLLLNAAM-SEHVPAGADDFLPVLIYVTIKAN 120
           +KELQKIN +KAP++KL  I+NCC+VI NLLLNA++ S+  P GAD+FLPVLIYVT+KAN
Sbjct: 140 QKELQKINMYKAPRDKLTCILNCCKVIGNLLLNASLASKDNPPGADEFLPVLIYVTLKAN 199

Query: 121 PPMLHSNLKFIKLYRRQAKLISEAEYYFTNLVSAKTFIADLNAKSLTMDEIIFEESMQAA 180
           PP LHSNL +I+ +RRQ++L+ EA YYFTN++SA++FI++++A +++MDE  FE +M+ A
Sbjct: 200 PPQLHSNLLYIQRFRRQSRLVGEASYYFTNMLSAESFISNIDANAISMDETEFERNMEFA 259

Query: 181 R-LTS--RVSSVKPSTCQAS--QQGKNDG-SFSKKMHLKR------------------DD 216
           R L S   V +  P++   +  Q  KN   S   K+  K+                  ++
Sbjct: 260 RALLSGLSVDTQDPNSPYQNHVQHDKNKAPSSDAKLESKKVTFASESSIAKVPSLSDLEN 319

Query: 217 TGVFQVLQHET------NYPYTEAKGEELAVEDVDILLNCYKDLVSNYTILCKAI 265
            G   +++ +        +PY  A   +L V DV+ LL  YK LVS Y  L K +
Sbjct: 320 KGACMIIKEDKLNDVFREFPYMFASVGDLTVSDVEDLLKNYKRLVSKYVCLSKGL 374