Miyakogusa Predicted Gene

Lj0g3v0319299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319299.1 tr|A8HNS4|A8HNS4_CHLRE Peroxisomal targeting
signal 1 receptor OS=Chlamydomonas reinhardtii GN=PEX5
,30.61,0.0000000000001,seg,NULL,CUFF.21651.1
         (279 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g009230.1 | peroxisomal targeting signal 1 receptor | HC |...   448   e-126

>Medtr3g009230.1 | peroxisomal targeting signal 1 receptor | HC |
           chr3:1861007-1847857 | 20130731
          Length = 744

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/280 (78%), Positives = 234/280 (83%), Gaps = 1/280 (0%)

Query: 1   MAMRDLITGATACPDPXXXXXXXNPLGALANVLVGSSSKTQERLKEIPTSTPTGPASQFY 60
           MAMRDLITGAT+CPDP       NPLG+LAN L+GSSSK QERLKEIPTST T  ASQFY
Sbjct: 1   MAMRDLITGATSCPDPSASSSSQNPLGSLANALLGSSSKNQERLKEIPTSTSTPSASQFY 60

Query: 61  SQPPLQLPGSEFDKPFLDSNSQGSAFLNSFRSAGAGGLEETWDEIQREGRVGQPY-GRVP 119
           SQP  QLPGSEFDKPFLD+NSQGS FLN FRSAGAGG +ETWDEIQ +G   + Y GR  
Sbjct: 61  SQPHTQLPGSEFDKPFLDANSQGSEFLNRFRSAGAGGFDETWDEIQGDGNQLRLYDGRGQ 120

Query: 120 PPQQLHQPALDGTPQRVXXXXXXXXXXXXRGGIPFHPAPLPMLGLSEGDKQCIRDRSSIM 179
            P QLHQP LDGTPQRV            RGGIPFHPAPLP+LGLSEGDKQCIRDRSSIM
Sbjct: 121 LPPQLHQPTLDGTPQRVLSTFLHSFLDSSRGGIPFHPAPLPVLGLSEGDKQCIRDRSSIM 180

Query: 180 ARHLFADKNEEFINAQVNALLCSLDIDSNVRGKGPMPERLRELEDYWNESQGNRRLGAHP 239
           ARHLFADK+EEFI+AQVNALL SLDIDSNVRGKGPMPER RELEDYWNESQGN   GAH 
Sbjct: 181 ARHLFADKSEEFIHAQVNALLSSLDIDSNVRGKGPMPERHRELEDYWNESQGNLIQGAHA 240

Query: 240 ADGWITEFSQNRERHDNPDSWANSFEQQHGANGWASEFEH 279
           +DGWITEFSQNRER+DNPD+WANSFEQQHGANGWASEFEH
Sbjct: 241 SDGWITEFSQNRERYDNPDAWANSFEQQHGANGWASEFEH 280