Miyakogusa Predicted Gene

Lj0g3v0318709.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318709.1 Non Characterized Hit- tr|I1KS47|I1KS47_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56996
PE,82.91,0,seg,NULL; RIBOSOMAL_S19,Ribosomal protein S19 conserved
site; RIBOSOMALS19,Ribosomal protein S19/S15,CUFF.21575.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g106780.1 | ribosomal protein S19 | HC | chr7:43489713-434...   157   3e-39
Medtr5g085270.1 | ribosomal protein S19 | HC | chr5:36823520-368...   157   3e-39
Medtr8g466190.1 | ribosomal protein S19 | LC | chr8:23615296-236...   102   7e-23
Medtr4g051420.1 | 30S ribosomal protein S19P | HC | chr4:1834614...    49   8e-07
Medtr3g035720.1 | 30S ribosomal protein S19P | HC | chr3:1323824...    49   8e-07
Medtr0002s0800.1 | 50S ribosomal protein L2P | HC | scaffold0002...    49   1e-06
Medtr0002s0360.1 | 50S ribosomal protein L2P | HC | scaffold0002...    49   1e-06

>Medtr7g106780.1 | ribosomal protein S19 | HC |
           chr7:43489713-43490649 | 20130731
          Length = 127

 Score =  157 bits (396), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

Query: 1   MRPTPMLRAISQQFLGIFGDTANAVX---XXXXXXXXXXXXXFIDAFLYKMKKNKDLLTN 57
           MR T  LR +++QFLGI GDTANAV                 FIDAFLYKMKKN +LL N
Sbjct: 1   MRATNFLRVLNKQFLGIAGDTANAVTNKLKSPSPPAPARKPAFIDAFLYKMKKNPELLKN 60

Query: 58  KTIWSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALTRKRKVKEHSNT 115
           K IWSRRSTILPEFVD+ V+IYNGKT +RCKITEGKVGHKFGEFALTRKRK K+  N 
Sbjct: 61  KQIWSRRSTILPEFVDSHVRIYNGKTFIRCKITEGKVGHKFGEFALTRKRKAKDQPNA 118


>Medtr5g085270.1 | ribosomal protein S19 | HC |
           chr5:36823520-36823900 | 20130731
          Length = 126

 Score =  157 bits (396), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 88/117 (75%), Gaps = 2/117 (1%)

Query: 1   MRPTPMLRAISQQFLGIFGDTANAVXXXXXXX--XXXXXXXFIDAFLYKMKKNKDLLTNK 58
           MRPT MLR +++QF+GI GDT NAV                FIDAFLYKMKKN +LL NK
Sbjct: 1   MRPTYMLRVLNKQFIGIAGDTVNAVAKKLTSSPPLVSHKPAFIDAFLYKMKKNPELLKNK 60

Query: 59  TIWSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALTRKRKVKEHSNT 115
           +IWSRRSTIL EFVD+ VKIYNGKT +RCKITEGKVGHKFGEFALTRKRK K+  N 
Sbjct: 61  SIWSRRSTILLEFVDSHVKIYNGKTFIRCKITEGKVGHKFGEFALTRKRKSKDQPNA 117


>Medtr8g466190.1 | ribosomal protein S19 | LC |
           chr8:23615296-23614739 | 20130731
          Length = 100

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 53/60 (88%)

Query: 51  NKDLLTNKTIWSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALTRKRKVK 110
           N +LL NK+IWSRRS ILPEFVD+ VKIYNGKT + CKITEGKVGHKFGEFALTRKRK +
Sbjct: 32  NPELLKNKSIWSRRSIILPEFVDSHVKIYNGKTFICCKITEGKVGHKFGEFALTRKRKSR 91


>Medtr4g051420.1 | 30S ribosomal protein S19P | HC |
           chr4:18346146-18345868 | 20130731
          Length = 92

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 61  WSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALT 104
           WSR STI+P  +  T+ I+NGK  +   IT+  VGHK GEF+ T
Sbjct: 34  WSRTSTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPT 77


>Medtr3g035720.1 | 30S ribosomal protein S19P | HC |
           chr3:13238242-13238961 | 20130731
          Length = 92

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 61  WSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALT 104
           WSR STI+P  +  T+ I+NGK  +   IT+  VGHK GEF+ T
Sbjct: 34  WSRTSTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPT 77


>Medtr0002s0800.1 | 50S ribosomal protein L2P | HC |
           scaffold0002:281769-280819 | 20130731
          Length = 216

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 48  MKKNKDLLTNKTIWSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALTR 105
           MK+ K+ +     WSR S+ILP  V  T+ I+NGK  +   IT   VG K GEF  TR
Sbjct: 146 MKEEKETIVT---WSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 200


>Medtr0002s0360.1 | 50S ribosomal protein L2P | HC |
           scaffold0002:199254-200204 | 20130731
          Length = 216

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 48  MKKNKDLLTNKTIWSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFGEFALTR 105
           MK+ K+ +     WSR S+ILP  V  T+ I+NGK  +   IT   VG K GEF  TR
Sbjct: 146 MKEEKETIVT---WSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 200