Miyakogusa Predicted Gene

Lj0g3v0318569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318569.1 Non Characterized Hit- tr|B9SDY5|B9SDY5_RICCO DNA
binding protein, putative OS=Ricinus communis
GN=R,62.48,0,Ribonuclease H-like,Ribonuclease H-like domain; seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,CUFF.21565.1
         (764 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g028350.1 | hypothetical protein | LC | chr3:8989418-89888...    54   4e-07

>Medtr3g028350.1 | hypothetical protein | LC | chr3:8989418-8988833
           | 20130731
          Length = 139

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 11/60 (18%)

Query: 487 RPAMGYIYAGMYRAKEAIKKALVKREEYMVYWNIIHHRWEKLWHHPLHAAGFYLNPKFFY 546
           +PAM +IY  M +AK+           Y    NII  RW+K++H PLH A +YLNP+  Y
Sbjct: 56  KPAMRFIYEAMDQAKD-----------YKPILNIIDDRWDKIFHRPLHVAAYYLNPQLHY 104